MFEM  v4.6.0
Finite element discretization library
volta_solver.cpp
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2 // at the Lawrence Livermore National Laboratory. All Rights reserved. See files
3 // LICENSE and NOTICE for details. LLNL-CODE-806117.
4 //
5 // This file is part of the MFEM library. For more information and source code
6 // availability visit https://mfem.org.
7 //
8 // MFEM is free software; you can redistribute it and/or modify it under the
9 // terms of the BSD-3 license. We welcome feedback and contributions, see file
10 // CONTRIBUTING.md for details.
11 
12 #include "volta_solver.hpp"
13 
14 #ifdef MFEM_USE_MPI
15 
16 using namespace std;
17 namespace mfem
18 {
19 
20 using namespace common;
21 
22 namespace electromagnetics
23 {
24 
25 VoltaSolver::VoltaSolver(ParMesh & pmesh, int order,
26  Array<int> & dbcs, Vector & dbcv,
27  Array<int> & nbcs, Vector & nbcv,
28  Coefficient & epsCoef,
29  double (*phi_bc )(const Vector&),
30  double (*rho_src)(const Vector&),
31  void (*p_src )(const Vector&, Vector&),
32  Vector & point_charges)
33  : myid_(0),
34  num_procs_(1),
35  order_(order),
36  pmesh_(&pmesh),
37  dbcs_(&dbcs),
38  dbcv_(&dbcv),
39  nbcs_(&nbcs),
40  nbcv_(&nbcv),
41  visit_dc_(NULL),
42  H1FESpace_(NULL),
43  HCurlFESpace_(NULL),
44  HDivFESpace_(NULL),
45  L2FESpace_(NULL),
46  divEpsGrad_(NULL),
47  h1Mass_(NULL),
48  h1SurfMass_(NULL),
49  hDivMass_(NULL),
50  hCurlHDivEps_(NULL),
51  hCurlHDiv_(NULL),
52  weakDiv_(NULL),
53  rhod_(NULL),
54  l2_vol_int_(NULL),
55  rt_surf_int_(NULL),
56  grad_(NULL),
57  phi_(NULL),
58  rho_src_(NULL),
59  rho_(NULL),
60  sigma_src_(NULL),
61  e_(NULL),
62  d_(NULL),
63  p_src_(NULL),
64  oneCoef_(1.0),
65  epsCoef_(&epsCoef),
66  phiBCCoef_(NULL),
67  rhoCoef_(NULL),
68  pCoef_(NULL),
69  phi_bc_func_(phi_bc),
70  rho_src_func_(rho_src),
71  p_src_func_(p_src),
72  point_charge_params_(point_charges),
73  point_charges_(0)
74 {
75  // Initialize MPI variables
76  MPI_Comm_size(pmesh_->GetComm(), &num_procs_);
77  MPI_Comm_rank(pmesh_->GetComm(), &myid_);
78 
79  // Define compatible parallel finite element spaces on the parallel
80  // mesh. Here we use arbitrary order H1, Nedelec, and Raviart-Thomas finite
81  // elements.
82  H1FESpace_ = new H1_ParFESpace(pmesh_,order,pmesh_->Dimension());
83  HCurlFESpace_ = new ND_ParFESpace(pmesh_,order,pmesh_->Dimension());
84  HDivFESpace_ = new RT_ParFESpace(pmesh_,order,pmesh_->Dimension());
85  L2FESpace_ = new L2_ParFESpace(pmesh_,order-1,pmesh_->Dimension());
86 
87  // Select surface attributes for Dirichlet BCs
88  AttrToMarker(pmesh.bdr_attributes.Max(), *dbcs_, ess_bdr_);
89 
90  // Setup various coefficients
91 
92  // Potential on outer surface
93  if ( phi_bc_func_ != NULL )
94  {
95  phiBCCoef_ = new FunctionCoefficient(*phi_bc_func_);
96  }
97 
98  // Volume Charge Density
99  if ( rho_src_func_ != NULL )
100  {
101  rhoCoef_ = new FunctionCoefficient(rho_src_func_);
102  }
103 
104  // Polarization
105  if ( p_src_func_ != NULL )
106  {
107  pCoef_ = new VectorFunctionCoefficient(pmesh_->SpaceDimension(),
108  p_src_func_);
109  }
110 
111  // Bilinear Forms
112  divEpsGrad_ = new ParBilinearForm(H1FESpace_);
113  divEpsGrad_->AddDomainIntegrator(new DiffusionIntegrator(*epsCoef_));
114 
115  hDivMass_ = new ParBilinearForm(HDivFESpace_);
117 
118  hCurlHDivEps_ = new ParMixedBilinearForm(HCurlFESpace_,HDivFESpace_);
119  hCurlHDivEps_->AddDomainIntegrator(new VectorFEMassIntegrator(*epsCoef_));
120 
121  rhod_ = new ParLinearForm(H1FESpace_);
122 
123  l2_vol_int_ = new ParLinearForm(L2FESpace_);
124  l2_vol_int_->AddDomainIntegrator(new DomainLFIntegrator(oneCoef_));
125 
126  rt_surf_int_ = new ParLinearForm(HDivFESpace_);
128 
129  // Discrete derivative operator
130  grad_ = new ParDiscreteGradOperator(H1FESpace_, HCurlFESpace_);
131  div_ = new ParDiscreteDivOperator(HDivFESpace_, L2FESpace_);
132 
133  // Build grid functions
134  phi_ = new ParGridFunction(H1FESpace_);
135  d_ = new ParGridFunction(HDivFESpace_);
136  e_ = new ParGridFunction(HCurlFESpace_);
137  rho_ = new ParGridFunction(L2FESpace_);
138 
139  if ( point_charge_params_.Size() > 0 )
140  {
141  int dim = pmesh_->Dimension();
142  int npts = point_charge_params_.Size() / (dim + 1);
143  point_charges_.resize(npts);
144 
145  Vector cent(dim);
146  for (int i=0; i<npts; i++)
147  {
148  for (int d=0; d<dim; d++)
149  {
150  cent[d] = point_charge_params_[(dim + 1) * i + d];
151  }
152  double s = point_charge_params_[(dim + 1) * i + dim];
153 
154  point_charges_[i] = new DeltaCoefficient();
155  point_charges_[i]->SetScale(s);
156  point_charges_[i]->SetDeltaCenter(cent);
157 
158  rhod_->AddDomainIntegrator(new DomainLFIntegrator(*point_charges_[i]));
159  }
160  }
161 
162  if ( rho_src_func_ )
163  {
164  rho_src_ = new ParGridFunction(H1FESpace_);
165 
166  h1Mass_ = new ParBilinearForm(H1FESpace_);
167  h1Mass_->AddDomainIntegrator(new MassIntegrator);
168  }
169 
170  if ( p_src_func_ )
171  {
172  p_src_ = new ParGridFunction(HCurlFESpace_);
173 
174  hCurlHDiv_ = new ParMixedBilinearForm(HCurlFESpace_, HDivFESpace_);
176 
177  weakDiv_ = new ParMixedBilinearForm(HCurlFESpace_, H1FESpace_);
179  }
180 
181  if ( nbcs_->Size() > 0 )
182  {
183  sigma_src_ = new ParGridFunction(H1FESpace_);
184 
185  h1SurfMass_ = new ParBilinearForm(H1FESpace_);
186  h1SurfMass_->AddBoundaryIntegrator(new MassIntegrator);
187  }
188 }
189 
191 {
192  delete phiBCCoef_;
193  delete rhoCoef_;
194  delete pCoef_;
195 
196  delete phi_;
197  delete rho_src_;
198  delete rho_;
199  delete rhod_;
200  delete l2_vol_int_;
201  delete rt_surf_int_;
202  delete sigma_src_;
203  delete d_;
204  delete e_;
205  delete p_src_;
206 
207  delete grad_;
208  delete div_;
209 
210  delete divEpsGrad_;
211  delete h1Mass_;
212  delete h1SurfMass_;
213  delete hDivMass_;
214  delete hCurlHDivEps_;
215  delete hCurlHDiv_;
216  delete weakDiv_;
217 
218  delete H1FESpace_;
219  delete HCurlFESpace_;
220  delete HDivFESpace_;
221  delete L2FESpace_;
222 
223  for (unsigned int i=0; i<point_charges_.size(); i++)
224  {
225  delete point_charges_[i];
226  }
227 
228  map<string,socketstream*>::iterator mit;
229  for (mit=socks_.begin(); mit!=socks_.end(); mit++)
230  {
231  delete mit->second;
232  }
233 }
234 
237 {
238  return H1FESpace_->GlobalTrueVSize();
239 }
240 
241 void
243 {
244  HYPRE_BigInt size_h1 = H1FESpace_->GlobalTrueVSize();
245  HYPRE_BigInt size_nd = HCurlFESpace_->GlobalTrueVSize();
246  HYPRE_BigInt size_rt = HDivFESpace_->GlobalTrueVSize();
247  HYPRE_BigInt size_l2 = L2FESpace_->GlobalTrueVSize();
248  if (myid_ == 0)
249  {
250  cout << "Number of H1 unknowns: " << size_h1 << endl;
251  cout << "Number of H(Curl) unknowns: " << size_nd << endl;
252  cout << "Number of H(Div) unknowns: " << size_rt << endl;
253  cout << "Number of L2 unknowns: " << size_l2 << endl;
254  }
255 }
256 
258 {
259  if (myid_ == 0) { cout << "Assembling ... " << flush; }
260 
261  divEpsGrad_->Assemble();
262  divEpsGrad_->Finalize();
263 
264  hDivMass_->Assemble();
265  hDivMass_->Finalize();
266 
267  hCurlHDivEps_->Assemble();
268  hCurlHDivEps_->Finalize();
269 
270  *rhod_ = 0.0;
271  rhod_->Assemble();
272 
273  l2_vol_int_->Assemble();
274  rt_surf_int_->Assemble();
275 
276  grad_->Assemble();
277  grad_->Finalize();
278 
279  div_->Assemble();
280  div_->Finalize();
281 
282  if ( h1Mass_ )
283  {
284  h1Mass_->Assemble();
285  h1Mass_->Finalize();
286  }
287  if ( h1SurfMass_ )
288  {
289  h1SurfMass_->Assemble();
290  h1SurfMass_->Finalize();
291  }
292  if ( hCurlHDiv_ )
293  {
294  hCurlHDiv_->Assemble();
295  hCurlHDiv_->Finalize();
296  }
297  if ( weakDiv_ )
298  {
299  weakDiv_->Assemble();
300  weakDiv_->Finalize();
301  }
302 
303  if (myid_ == 0) { cout << "done." << endl << flush; }
304 }
305 
306 void
308 {
309  if (myid_ == 0) { cout << "Updating ..." << endl; }
310 
311  // Inform the spaces that the mesh has changed
312  // Note: we don't need to interpolate any GridFunctions on the new mesh
313  // so we pass 'false' to skip creation of any transformation matrices.
314  H1FESpace_->Update(false);
315  HCurlFESpace_->Update(false);
316  HDivFESpace_->Update(false);
317  L2FESpace_->Update(false);
318 
319  // Inform the grid functions that the space has changed.
320  phi_->Update();
321  rhod_->Update();
322  l2_vol_int_->Update();
323  rt_surf_int_->Update();
324  d_->Update();
325  e_->Update();
326  rho_->Update();
327  if ( rho_src_ ) { rho_src_->Update(); }
328  if ( sigma_src_ ) { sigma_src_->Update(); }
329  if ( p_src_ ) { p_src_->Update(); }
330 
331  // Inform the bilinear forms that the space has changed.
332  divEpsGrad_->Update();
333  hDivMass_->Update();
334  hCurlHDivEps_->Update();
335 
336  if ( h1Mass_ ) { h1Mass_->Update(); }
337  if ( h1SurfMass_ ) { h1SurfMass_->Update(); }
338  if ( hCurlHDiv_ ) { hCurlHDiv_->Update(); }
339  if ( weakDiv_ ) { weakDiv_->Update(); }
340 
341  // Inform the other objects that the space has changed.
342  grad_->Update();
343  div_->Update();
344 }
345 
346 void
348 {
349  if (myid_ == 0) { cout << "Running solver ... " << endl; }
350 
351  // Initialize the electric potential with its boundary conditions
352  *phi_ = 0.0;
353 
354  if ( dbcs_->Size() > 0 )
355  {
356  if ( phiBCCoef_ )
357  {
358  // Apply gradient boundary condition
359  phi_->ProjectBdrCoefficient(*phiBCCoef_, ess_bdr_);
360  }
361  else
362  {
363  // Apply piecewise constant boundary condition
364  Array<int> dbc_bdr_attr(pmesh_->bdr_attributes.Max());
365  for (int i=0; i<dbcs_->Size(); i++)
366  {
367  ConstantCoefficient voltage((*dbcv_)[i]);
368  dbc_bdr_attr = 0;
369  if ((*dbcs_)[i] <= dbc_bdr_attr.Size())
370  {
371  dbc_bdr_attr[(*dbcs_)[i]-1] = 1;
372  }
373  phi_->ProjectBdrCoefficient(voltage, dbc_bdr_attr);
374  }
375  }
376  }
377 
378  // Initialize the volumetric charge density
379  if ( rho_src_ )
380  {
381  rho_src_->ProjectCoefficient(*rhoCoef_);
382  h1Mass_->AddMult(*rho_src_, *rhod_);
383  }
384 
385  // Initialize the Polarization
386  if ( p_src_ )
387  {
388  p_src_->ProjectCoefficient(*pCoef_);
389  weakDiv_->AddMult(*p_src_, *rhod_);
390  }
391 
392  // Initialize the surface charge density
393  if ( sigma_src_ )
394  {
395  *sigma_src_ = 0.0;
396 
397  Array<int> nbc_bdr_attr(pmesh_->bdr_attributes.Max());
398  for (int i=0; i<nbcs_->Size(); i++)
399  {
400  ConstantCoefficient sigma_coef((*nbcv_)[i]);
401  nbc_bdr_attr = 0;
402  if ((*nbcs_)[i] <= nbc_bdr_attr.Size())
403  {
404  nbc_bdr_attr[(*nbcs_)[i]-1] = 1;
405  }
406  sigma_src_->ProjectBdrCoefficient(sigma_coef, nbc_bdr_attr);
407  }
408  h1SurfMass_->AddMult(*sigma_src_, *rhod_);
409  }
410 
411  // Determine the essential BC degrees of freedom
412  if ( dbcs_->Size() > 0 )
413  {
414  // From user supplied boundary attributes
415  H1FESpace_->GetEssentialTrueDofs(ess_bdr_, ess_bdr_tdofs_);
416  }
417  else
418  {
419  // Use the first DoF on processor zero by default
420  if ( myid_ == 0 )
421  {
422  ess_bdr_tdofs_.SetSize(1);
423  ess_bdr_tdofs_[0] = 0;
424  }
425  }
426 
427  // Apply essential BC and form linear system
428  HypreParMatrix DivEpsGrad;
429  HypreParVector Phi(H1FESpace_);
430  HypreParVector RHS(H1FESpace_);
431 
432  divEpsGrad_->FormLinearSystem(ess_bdr_tdofs_, *phi_, *rhod_, DivEpsGrad,
433  Phi, RHS);
434 
435  // Define and apply a parallel PCG solver for AX=B with the AMG
436  // preconditioner from hypre.
437  HypreBoomerAMG amg(DivEpsGrad);
438  HyprePCG pcg(DivEpsGrad);
439  pcg.SetTol(1e-12);
440  pcg.SetMaxIter(500);
441  pcg.SetPrintLevel(2);
442  pcg.SetPreconditioner(amg);
443  pcg.Mult(RHS, Phi);
444 
445  // Extract the parallel grid function corresponding to the finite
446  // element approximation Phi. This is the local solution on each
447  // processor.
448  divEpsGrad_->RecoverFEMSolution(Phi, *rhod_, *phi_);
449 
450  // Compute the negative Gradient of the solution vector. This is
451  // the magnetic field corresponding to the scalar potential
452  // represented by phi.
453  grad_->Mult(*phi_, *e_); *e_ *= -1.0;
454 
455  // Compute electric displacement (D) from E and P (if present)
456  if (myid_ == 0) { cout << "Computing D ..." << flush; }
457 
458  ParGridFunction ed(HDivFESpace_);
459  hCurlHDivEps_->Mult(*e_, ed);
460  if ( p_src_ )
461  {
462  hCurlHDiv_->AddMult(*p_src_, ed, -1.0);
463  }
464 
465  HypreParMatrix MassHDiv;
466  Vector ED, D;
467 
468  Array<int> dbc_dofs_d;
469  hDivMass_->FormLinearSystem(dbc_dofs_d, *d_, ed, MassHDiv, D, ED);
470 
471  HyprePCG pcgM(MassHDiv);
472  pcgM.SetTol(1e-12);
473  pcgM.SetMaxIter(500);
474  pcgM.SetPrintLevel(0);
475  HypreDiagScale diagM;
476  pcgM.SetPreconditioner(diagM);
477  pcgM.Mult(ED, D);
478 
479  hDivMass_->RecoverFEMSolution(D, ed, *d_);
480 
481  // Compute charge density from rho = Div(D)
482  div_->Mult(*d_, *rho_);
483 
484  if (myid_ == 0) { cout << "done." << flush; }
485 
486  {
487  // Compute total charge as volume integral of rho
488  double charge_rho = (*l2_vol_int_)(*rho_);
489 
490  // Compute total charge as surface integral of D
491  double charge_D = (*rt_surf_int_)(*d_);
492 
493  if (myid_ == 0)
494  {
495  cout << endl << "Total charge: \n"
496  << " Volume integral of charge density: " << charge_rho
497  << "\n Surface integral of dielectric flux: " << charge_D
498  << endl << flush;
499  }
500  }
501 
502  if (myid_ == 0) { cout << "Solver done. " << endl; }
503 }
504 
505 void
507 {
508  if (myid_ == 0) { cout << "Estimating Error ... " << flush; }
509 
510  // Space for the discontinuous (original) flux
511  DiffusionIntegrator flux_integrator(*epsCoef_);
512  L2_FECollection flux_fec(order_, pmesh_->Dimension());
513  // ND_FECollection flux_fec(order_, pmesh_->Dimension());
514  ParFiniteElementSpace flux_fes(pmesh_, &flux_fec, pmesh_->SpaceDimension());
515 
516  // Space for the smoothed (conforming) flux
517  int norm_p = 1;
518  RT_FECollection smooth_flux_fec(order_-1, pmesh_->Dimension());
519  ParFiniteElementSpace smooth_flux_fes(pmesh_, &smooth_flux_fec);
520 
521  L2ZZErrorEstimator(flux_integrator, *phi_,
522  smooth_flux_fes, flux_fes, errors, norm_p);
523 
524  if (myid_ == 0) { cout << "done." << endl; }
525 }
526 
527 void
529 {
530  visit_dc_ = &visit_dc;
531 
532  visit_dc.RegisterField("Phi", phi_);
533  visit_dc.RegisterField("D", d_);
534  visit_dc.RegisterField("E", e_);
535  visit_dc.RegisterField("Rho", rho_);
536  if ( rho_src_ ) { visit_dc.RegisterField("Rho Source", rho_src_); }
537  if ( p_src_ ) { visit_dc.RegisterField("P Source", p_src_); }
538  if ( sigma_src_ ) { visit_dc.RegisterField("Sigma Source", sigma_src_); }
539 }
540 
541 void
543 {
544  if ( visit_dc_ )
545  {
546  if (myid_ == 0) { cout << "Writing VisIt files ..." << flush; }
547 
548  HYPRE_BigInt prob_size = this->GetProblemSize();
549  visit_dc_->SetCycle(it);
550  visit_dc_->SetTime(prob_size);
551  visit_dc_->Save();
552 
553  if (myid_ == 0) { cout << " done." << endl; }
554  }
555 }
556 
557 void
559 {
560  if ( myid_ == 0 ) { cout << "Opening GLVis sockets." << endl; }
561 
562  socks_["Phi"] = new socketstream;
563  socks_["Phi"]->precision(8);
564 
565  socks_["D"] = new socketstream;
566  socks_["D"]->precision(8);
567 
568  socks_["E"] = new socketstream;
569  socks_["E"]->precision(8);
570 
571  socks_["Rho"] = new socketstream;
572  socks_["Rho"]->precision(8);
573 
574  if ( rho_src_ )
575  {
576  socks_["RhoSrc"] = new socketstream;
577  socks_["RhoSrc"]->precision(8);
578  }
579  if ( p_src_ )
580  {
581  socks_["PSrc"] = new socketstream;
582  socks_["PSrc"]->precision(8);
583  }
584  if ( sigma_src_ )
585  {
586  socks_["SigmaSrc"] = new socketstream;
587  socks_["SigmaSrc"]->precision(8);
588  }
589 }
590 
591 void
593 {
594  if (myid_ == 0) { cout << "Sending data to GLVis ..." << flush; }
595 
596  char vishost[] = "localhost";
597  int visport = 19916;
598 
599  int Wx = 0, Wy = 0; // window position
600  int Ww = 350, Wh = 350; // window size
601  int offx = Ww+10, offy = Wh+45; // window offsets
602 
603  VisualizeField(*socks_["Phi"], vishost, visport,
604  *phi_, "Electric Potential (Phi)", Wx, Wy, Ww, Wh);
605  Wx += offx;
606 
607  VisualizeField(*socks_["E"], vishost, visport,
608  *e_, "Electric Field (E)", Wx, Wy, Ww, Wh);
609  Wx += offx;
610 
611  VisualizeField(*socks_["D"], vishost, visport,
612  *d_, "Electric Displacement (D)", Wx, Wy, Ww, Wh);
613  Wx += offx;
614 
615  VisualizeField(*socks_["Rho"], vishost, visport,
616  *rho_, "Charge Density", Wx, Wy, Ww, Wh);
617  Wx = 0; Wy += offy; // next line
618 
619  if ( rho_src_ )
620  {
621  VisualizeField(*socks_["RhoSrc"], vishost, visport,
622  *rho_src_, "Charge Density Source (Rho)", Wx, Wy, Ww, Wh);
623  Wx += offx;
624  }
625  if ( p_src_ )
626  {
627  VisualizeField(*socks_["PSrc"], vishost, visport,
628  *p_src_, "Electric Polarization Source (P)",
629  Wx, Wy, Ww, Wh);
630  Wx += offx;
631  }
632  if ( sigma_src_ )
633  {
634  VisualizeField(*socks_["SigmaSrc"], vishost, visport,
635  *sigma_src_, "Surface Charge Density Source (Sigma)",
636  Wx, Wy, Ww, Wh);
637  // Wx += offx; // not used
638  }
639  if (myid_ == 0) { cout << " done." << endl; }
640 }
641 
642 } // namespace electromagnetics
643 
644 } // namespace mfem
645 
646 #endif // MFEM_USE_MPI
const char vishost[]
void SetTol(double tol)
Definition: hypre.cpp:3990
Class for domain integration L(v) := (f, v)
Definition: lininteg.hpp:108
virtual void GetEssentialTrueDofs(const Array< int > &bdr_attr_is_ess, Array< int > &ess_tdof_list, int component=-1)
Definition: pfespace.cpp:1031
void SetCycle(int c)
Set time cycle (for time-dependent simulations)
A coefficient that is constant across space and time.
Definition: coefficient.hpp:84
virtual void FormLinearSystem(const Array< int > &ess_tdof_list, Vector &x, Vector &b, OperatorHandle &A, Vector &X, Vector &B, int copy_interior=0)
Form the linear system A X = B, corresponding to this bilinear form and the linear form b(...
void AttrToMarker(int max_attr, const Array< int > &attrs, Array< int > &marker)
Convert a set of attribute numbers to a marker array.
int Dimension() const
Dimension of the reference space used within the elements.
Definition: mesh.hpp:1020
virtual void Mult(const HypreParVector &b, HypreParVector &x) const
Solve Ax=b with hypre&#39;s PCG.
Definition: hypre.cpp:4038
int offx
virtual void Update(bool want_transform=true)
Definition: pfespace.cpp:3323
int Wx
int Size() const
Returns the size of the vector.
Definition: vector.hpp:197
T Max() const
Find the maximal element in the array, using the comparison operator < for class T.
Definition: array.cpp:68
Delta function coefficient optionally multiplied by a weight coefficient and a scaled time dependent ...
Abstract parallel finite element space.
Definition: pfespace.hpp:28
void RegisterVisItFields(VisItDataCollection &visit_dc)
virtual void ProjectCoefficient(Coefficient &coeff)
Project coeff Coefficient to this GridFunction. The projection computation depends on the choice of t...
Definition: pgridfunc.cpp:561
STL namespace.
virtual void Finalize(int skip_zeros=1)
Finalizes the matrix initialization.
virtual void Mult(const Vector &x, Vector &y) const
Matrix multiplication: .
void SetPrintLevel(int print_lvl)
Definition: hypre.cpp:4010
void Update(ParFiniteElementSpace *pf=NULL)
Update the object according to the given new FE space *pf.
Definition: plinearform.cpp:21
virtual void Update(FiniteElementSpace *nfes=NULL)
Update the FiniteElementSpace and delete all data associated with the old one.
void GetErrorEstimates(Vector &errors)
void AddDomainIntegrator(BilinearFormIntegrator *bfi)
Adds a domain integrator. Assumes ownership of bfi.
The BoomerAMG solver in hypre.
Definition: hypre.hpp:1590
Class for parallel linear form.
Definition: plinearform.hpp:26
virtual void Update()
Transform by the Space UpdateMatrix (e.g., on Mesh change).
Definition: pgridfunc.cpp:90
Jacobi preconditioner in hypre.
Definition: hypre.hpp:1421
void Assemble()
Assembles the ParLinearForm i.e. sums over all domain/bdr integrators.
Definition: plinearform.cpp:46
Data collection with VisIt I/O routines.
void Assemble(int skip_zeros=1)
void Assemble(int skip_zeros=1)
Assemble the local matrix.
const int visport
void AddBoundaryIntegrator(LinearFormIntegrator *lfi)
Adds new Boundary Integrator. Assumes ownership of lfi.
Definition: linearform.cpp:72
void SetTime(double t)
Set physical time (for time-dependent simulations)
HYPRE_BigInt GlobalTrueVSize() const
Definition: pfespace.hpp:281
MPI_Comm GetComm() const
Definition: pmesh.hpp:351
void SetMaxIter(int max_iter)
Definition: hypre.cpp:4000
Arbitrary order H(div)-conforming Raviart-Thomas finite elements.
Definition: fe_coll.hpp:380
A general vector function coefficient.
virtual void AddMult(const Vector &x, Vector &y, const double a=1.0) const
Add the matrix vector multiple to a vector: .
Wrapper for hypre&#39;s parallel vector class.
Definition: hypre.hpp:161
void AddDomainIntegrator(LinearFormIntegrator *lfi)
Adds new Domain Integrator. Assumes ownership of lfi.
Definition: linearform.cpp:41
Array< int > bdr_attributes
A list of all unique boundary attributes used by the Mesh.
Definition: mesh.hpp:275
PCG solver in hypre.
Definition: hypre.hpp:1215
void ProjectBdrCoefficient(Coefficient *coeff[], VectorCoefficient *vcoeff, Array< int > &attr)
Definition: pgridfunc.cpp:669
Base class Coefficients that optionally depend on space and time. These are used by the BilinearFormI...
Definition: coefficient.hpp:41
virtual void Save() override
Save the collection and a VisIt root file.
void SetSize(int nsize)
Change the logical size of the array, keep existing entries.
Definition: array.hpp:687
HYPRE_Int HYPRE_BigInt
double L2ZZErrorEstimator(BilinearFormIntegrator &flux_integrator, const ParGridFunction &x, ParFiniteElementSpace &smooth_flux_fes, ParFiniteElementSpace &flux_fes, Vector &errors, int norm_p, double solver_tol, int solver_max_it)
Definition: pgridfunc.cpp:1270
int SpaceDimension() const
Dimension of the physical space containing the mesh.
Definition: mesh.hpp:1023
virtual void RecoverFEMSolution(const Vector &X, const Vector &b, Vector &x)
Class for parallel bilinear form using different test and trial FE spaces.
int Wh
virtual void Finalize(int skip_zeros=1)
Finalizes the matrix initialization.
void AddBoundaryIntegrator(BilinearFormIntegrator *bfi)
Adds new Boundary Integrator. Assumes ownership of bfi.
int dim
Definition: ex24.cpp:53
void SetPreconditioner(HypreSolver &precond)
Set the hypre solver to be used as a preconditioner.
Definition: hypre.cpp:4015
void AddDomainIntegrator(BilinearFormIntegrator *bfi)
Adds new Domain Integrator. Assumes ownership of bfi.
Class for parallel bilinear form.
int Size() const
Return the logical size of the array.
Definition: array.hpp:141
virtual void AddMult(const Vector &x, Vector &y, const double a=1.0) const
Operator application: y+=A(x) (default) or y+=a*A(x).
A general function coefficient.
Vector data type.
Definition: vector.hpp:58
int offy
int Wy
int Ww
RefCoord s[3]
Class for parallel grid function.
Definition: pgridfunc.hpp:32
Wrapper for hypre&#39;s ParCSR matrix class.
Definition: hypre.hpp:343
virtual void Assemble(int skip_zeros=1)
Construct the internal matrix representation of the discrete linear operator.
Class for parallel meshes.
Definition: pmesh.hpp:32
Arbitrary order "L2-conforming" discontinuous finite elements.
Definition: fe_coll.hpp:327
virtual void RegisterField(const std::string &field_name, GridFunction *gf) override
Add a grid function to the collection and update the root file.