ex1.cpp

Go to the documentation of this file.

//                                MFEM Example 1
//                             GINKGO Modification
//
// Compile with: make ex1
//
// Sample runs:  ex1 -m ../../data/square-disc.mesh
//               ex1 -m ../../data/star.mesh
//               ex1 -m ../../data/star-mixed.mesh
//               ex1 -m ../../data/escher.mesh
//               ex1 -m ../../data/fichera.mesh
//               ex1 -m ../../data/fichera-mixed.mesh
//               ex1 -m ../../data/toroid-wedge.mesh
//               ex1 -m ../../data/square-disc-p2.vtk -o 2
//               ex1 -m ../../data/square-disc-p3.mesh -o 3
//               ex1 -m ../../data/square-disc-nurbs.mesh -o -1
//               ex1 -m ../../data/star-mixed-p2.mesh -o 2
//               ex1 -m ../../data/disc-nurbs.mesh -o -1
//               ex1 -m ../../data/pipe-nurbs.mesh -o -1
//               ex1 -m ../../data/fichera-mixed-p2.mesh -o 2
//               ex1 -m ../../data/star-surf.mesh
//               ex1 -m ../../data/square-disc-surf.mesh
//               ex1 -m ../../data/inline-segment.mesh
//               ex1 -m ../../data/amr-quad.mesh
//               ex1 -m ../../data/amr-hex.mesh
//               ex1 -m ../../data/fichera-amr.mesh
//               ex1 -m ../../data/mobius-strip.mesh
//               ex1 -m ../../data/mobius-strip.mesh -o -1 -sc
//
// Device sample runs:
//               ex1 -pa -d cuda
//               ex1 -pa -d raja-cuda
//               ex1 -pa -d occa-cuda
//               ex1 -pa -d raja-omp
//               ex1 -pa -d occa-omp
//               ex1 -m ../../data/beam-hex.mesh -pa -d cuda
//
// Description:  This example code demonstrates the use of MFEM to define a
//               simple finite element discretization of the Poisson problem
//               -Delta u = 1 with homogeneous Dirichlet boundary conditions.
//               Specifically, we discretize using a FE space of the specified
//               order, or if order < 1 using an isoparametric/isogeometric
//               space (i.e. quadratic for quadratic curvilinear mesh, NURBS for
//               NURBS mesh, etc.)
//
//               The example highlights the use of mesh refinement, finite
//               element grid functions, as well as linear and bilinear forms
//               corresponding to the left-hand side and right-hand side of the
//               discrete linear system. We also cover the explicit elimination
//               of essential boundary conditions, static condensation, and the
//               optional connection to the GLVis tool for visualization.
 
#include "mfem.hpp"
#include <fstream>
#include <iostream>
 
#ifndef MFEM_USE_GINKGO
#error This example requires that MFEM is built with MFEM_USE_GINKGO=YES
#endif
 
using namespace std;
using namespace mfem;
 
int main(int argc, char *argv[])
{
   // 1. Parse command-line options.
   const char *mesh_file = "../../data/star.mesh";
   int order = 1;
   bool static_cond = false;
   bool pa = false;
   const char *device_config = "cpu";
   bool visualization = true;
   int solver_config = 0;
   int print_lvl = 1;
 
   OptionsParser args(argc, argv);
   args.AddOption(&mesh_file, "-m", "--mesh",
                  "Mesh file to use.");
   args.AddOption(&order, "-o", "--order",
                  "Finite element order (polynomial degree) or -1 for"
                  " isoparametric space.");
   args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
                  "--no-static-condensation", "Enable static condensation.");
   args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
                  "--no-partial-assembly", "Enable Partial Assembly.");
   args.AddOption(&device_config, "-d", "--device",
                  "Device configuration string, see Device::Configure().");
   args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                  "--no-visualization",
                  "Enable or disable GLVis visualization.");
   args.AddOption(&solver_config, "-s", "--solver-config",
                  "Solver and preconditioner combination: \n\t"
                  "   0 - Ginkgo solver and Ginkgo preconditioner, \n\t"
                  "   1 - Ginkgo solver and MFEM preconditioner, \n\t"
                  "   2 - MFEM solver and Ginkgo preconditioner, \n\t"
                  "   3 - MFEM solver and MFEM preconditioner.");
   args.AddOption(&print_lvl, "-pl", "--print-level",
                  "Print level for iterative solver (1 prints every iteration).");
   args.Parse();
   if (!args.Good())
   {
      args.PrintUsage(cout);
      return 1;
   }
   args.PrintOptions(cout);
 
   // 2. Enable hardware devices such as GPUs, and programming models such as
   //    CUDA, OCCA, RAJA and OpenMP based on command line options.
   Device device(device_config);
   device.Print();
 
   // 3. Read the mesh from the given mesh file. We can handle triangular,
   //    quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
   //    the same code.
   Mesh *mesh = new Mesh(mesh_file, 1, 1);
   int dim = mesh->Dimension();
 
   // 4. Refine the mesh to increase the resolution. In this example we do
   //    'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
   //    largest number that gives a final mesh with no more than 50,000
   //    elements.
   {
      int ref_levels =
         (int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
      for (int l = 0; l < ref_levels; l++)
      {
         mesh->UniformRefinement();
      }
   }
 
   // 5. Define a finite element space on the mesh. Here we use continuous
   //    Lagrange finite elements of the specified order. If order < 1, we
   //    instead use an isoparametric/isogeometric space.
   FiniteElementCollection *fec;
   if (order > 0)
   {
      fec = new H1_FECollection(order, dim);
   }
   else if (mesh->GetNodes())
   {
      fec = mesh->GetNodes()->OwnFEC();
      cout << "Using isoparametric FEs: " << fec->Name() << endl;
   }
   else
   {
      fec = new H1_FECollection(order = 1, dim);
   }
   FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
   cout << "Number of finite element unknowns: "
        << fespace->GetTrueVSize() << endl;
 
   // 6. Determine the list of true (i.e. conforming) essential boundary dofs.
   //    In this example, the boundary conditions are defined by marking all
   //    the boundary attributes from the mesh as essential (Dirichlet) and
   //    converting them to a list of true dofs.
   Array<int> ess_tdof_list;
   if (mesh->bdr_attributes.Size())
   {
      Array<int> ess_bdr(mesh->bdr_attributes.Max());
      ess_bdr = 1;
      fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
   }
 
   // 7. Set up the linear form b(.) which corresponds to the right-hand side of
   //    the FEM linear system, which in this case is (1,phi_i) where phi_i are
   //    the basis functions in the finite element fespace.
   LinearForm *b = new LinearForm(fespace);
   ConstantCoefficient one(1.0);
   b->AddDomainIntegrator(new DomainLFIntegrator(one));
   b->Assemble();
 
   // 8. Define the solution vector x as a finite element grid function
   //    corresponding to fespace. Initialize x with initial guess of zero,
   //    which satisfies the boundary conditions.
   GridFunction x(fespace);
   x = 0.0;
 
   // 9. Set up the bilinear form a(.,.) on the finite element space
   //    corresponding to the Laplacian operator -Delta, by adding the Diffusion
   //    domain integrator.
   BilinearForm *a = new BilinearForm(fespace);
   if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
   a->AddDomainIntegrator(new DiffusionIntegrator(one));
 
   // 10. Assemble the bilinear form and the corresponding linear system,
   //     applying any necessary transformations such as: eliminating boundary
   //     conditions, applying conforming constraints for non-conforming AMR,
   //     static condensation, etc.
   if (static_cond) { a->EnableStaticCondensation(); }
   a->Assemble();
 
   OperatorPtr A;
   Vector B, X;
   a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
 
   cout << "Size of linear system: " << A->Height() << endl;
 
   // 11. Solve the linear system A X = B.
   if (!pa)
   {
      switch (solver_config)
      {
         // Solve the linear system with CG + IC from Ginkgo
         case 0:
         {
            cout << "Using Ginkgo solver + preconditioner...\n";
            Ginkgo::GinkgoExecutor exec(device);
            Ginkgo::IcPreconditioner ginkgo_precond(exec, "paric", 30);
            Ginkgo::CGSolver ginkgo_solver(exec, ginkgo_precond);
            ginkgo_solver.SetPrintLevel(print_lvl);
            ginkgo_solver.SetRelTol(1e-12);
            ginkgo_solver.SetAbsTol(0.0);
            ginkgo_solver.SetMaxIter(400);
            ginkgo_solver.SetOperator(*(A.Ptr()));
            ginkgo_solver.Mult(B, X);
            break;
         }
 
         // Solve the linear system with CG from Ginkgo + MFEM preconditioner
         case 1:
         {
            cout << "Using Ginkgo solver + MFEM preconditioner...\n";
            Ginkgo::GinkgoExecutor exec(device);
            //Create MFEM preconditioner and wrap it for Ginkgo's use.
            DSmoother M((SparseMatrix&)(*A));
            Ginkgo::MFEMPreconditioner gko_M(exec, M);
            Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
            ginkgo_solver.SetPrintLevel(print_lvl);
            ginkgo_solver.SetRelTol(1e-12);
            ginkgo_solver.SetAbsTol(0.0);
            ginkgo_solver.SetMaxIter(400);
            ginkgo_solver.SetOperator(*(A.Ptr()));
            ginkgo_solver.Mult(B, X);
            break;
         }
 
         // Ginkgo IC preconditioner +  MFEM CG solver
         case 2:
         {
            cout << "Using MFEM solver + Ginkgo preconditioner...\n";
            Ginkgo::GinkgoExecutor exec(device);
            Ginkgo::IcPreconditioner M(exec, "paric", 30);
            M.SetOperator(*(A.Ptr()));  // Generate the preconditioner for the matrix A.
            PCG(*A, M, B, X, print_lvl, 400, 1e-12, 0.0);
            break;
         }
 
         // MFEM solver + MFEM preconditioner
         case 3:
         {
            cout << "Using MFEM solver + MFEM preconditioner...\n";
            // Use a simple Jacobi preconditioner with PCG.
            DSmoother M((SparseMatrix&)(*A));
            PCG(*A, M, B, X, print_lvl, 400, 1e-12, 0.0);
            break;
         }
      } // End switch on solver_config
   }
   // Partial assembly mode.  Cannot use Ginkgo preconditioners, but can use Ginkgo
   // solvers.
   else
   {
      if (UsesTensorBasis(*fespace))
      {
         // Use Jacobi preconditioning in partial assembly mode.
         OperatorJacobiSmoother M(*a, ess_tdof_list);
         switch (solver_config)
         {
            // No Ginkgo preconditioners work with matrix-free; error
            case 0:
            {
               cout << "Using Ginkgo solver + preconditioner...\n";
               MFEM_ABORT("Cannot use Ginkgo preconditioner in partial assembly mode.\n"
                          "            Try -s 1 to test Ginkgo solver with an MFEM preconditioner.");
               break;
            }
 
            // Use Ginkgo solver with MFEM preconditioner
            case 1:
            {
               cout << "Using Ginkgo solver + MFEM preconditioner...\n";
               Ginkgo::GinkgoExecutor exec(device);
               // Wrap MFEM preconditioner for Ginkgo's use.
               Ginkgo::MFEMPreconditioner gko_M(exec, M);
               Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
               ginkgo_solver.SetPrintLevel(print_lvl);
               ginkgo_solver.SetRelTol(1e-12);
               ginkgo_solver.SetAbsTol(0.0);
               ginkgo_solver.SetMaxIter(400);
               ginkgo_solver.SetOperator(*(A.Ptr()));
               ginkgo_solver.Mult(B, X);
               break;
            }
 
            // No Ginkgo preconditioners work with matrix-free; error
            case 2:
            {
               cout << "Using MFEM solver + Ginkgo preconditioner...\n";
               MFEM_ABORT("Cannot use Ginkgo preconditioner in partial assembly mode.\n"
                          "            Try -s 1 to test Ginkgo solver with an MFEM preconditioner.");
               break;
            }
 
            // Use MFEM solver and preconditioner
            case 3:
            {
               cout << "Using MFEM solver + MFEM preconditioner...\n";
               PCG(*A, M, B, X, print_lvl, 400, 1e-12, 0.0);
               break;
            }
         } // End switch on solver_config
      }
      else // CG with no preconditioning
      {
         cout << "Using MFEM solver + no preconditioner...\n";
         CG(*A, B, X, print_lvl, 400, 1e-12, 0.0);
      }
   }
 
   // 12. Recover the solution as a finite element grid function.
   a->RecoverFEMSolution(X, *b, x);
 
   // 13. Save the refined mesh and the solution. This output can be viewed later
   //     using GLVis: "glvis -m refined.mesh -g sol.gf".
   ofstream mesh_ofs("refined.mesh");
   mesh_ofs.precision(8);
   mesh->Print(mesh_ofs);
   ofstream sol_ofs("sol.gf");
   sol_ofs.precision(8);
   x.Save(sol_ofs);
 
   // 14. Send the solution by socket to a GLVis server.
   if (visualization)
   {
      char vishost[] = "localhost";
      int  visport   = 19916;
      socketstream sol_sock(vishost, visport);
      sol_sock.precision(8);
      sol_sock << "solution\n" << *mesh << x << flush;
   }
 
   // 15. Free the used memory.
   delete a;
   delete b;
   delete fespace;
   if (order > 0) { delete fec; }
   delete mesh;
 
   return 0;
}