pfespace.hpp

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// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
// reserved. See file COPYRIGHT for details.
//
// This file is part of the MFEM library. For more information and source code
// availability see http://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the GNU Lesser General Public License (as published by the Free
// Software Foundation) version 2.1 dated February 1999.

#ifndef MFEM_PFESPACE
#define MFEM_PFESPACE

#include "../config/config.hpp"

#ifdef MFEM_USE_MPI

#include "../linalg/hypre.hpp"
#include "../mesh/pmesh.hpp"
#include "../mesh/nurbs.hpp"
#include "fespace.hpp"

namespace mfem
{

/// Abstract parallel finite element space.
class ParFiniteElementSpace : public FiniteElementSpace
{
private:
   /// MPI data.
   MPI_Comm MyComm;
   int NRanks, MyRank;

   /// Parallel mesh; #mesh points to this object as well. Not owned.
   ParMesh *pmesh;
   /** Parallel non-conforming mesh extension object; same as pmesh->pncmesh.
       Not owned. */
   ParNCMesh *pncmesh;

   /// GroupCommunicator on the local VDofs. Owned.
   GroupCommunicator *gcomm;

   /// Number of true dofs in this processor (local true dofs).
   mutable int ltdof_size;

   /// Number of vertex/edge/face/total ghost DOFs (nonconforming case).
   int ngvdofs, ngedofs, ngfdofs, ngdofs;

   /// The group of each local dof.
   Array<int> ldof_group;

   /// For a local dof: the local true dof number in the master of its group.
   mutable Array<int> ldof_ltdof;

   /// Offsets for the dofs in each processor in global numbering.
   mutable Array<HYPRE_Int> dof_offsets;

   /// Offsets for the true dofs in each processor in global numbering.
   mutable Array<HYPRE_Int> tdof_offsets;

   /// Offsets for the true dofs in neighbor processor in global numbering.
   mutable Array<HYPRE_Int> tdof_nb_offsets;

   /// Previous 'dof_offsets' (before Update()), column partition of T.
   Array<HYPRE_Int> old_dof_offsets;

   /// The sign of the basis functions at the scalar local dofs.
   Array<int> ldof_sign;

   /// The matrix P (interpolation from true dof to dof). Owned.
   mutable HypreParMatrix *P;
   /// Optimized action-only prolongation operator for conforming meshes. Owned.
   mutable class ConformingProlongationOperator *Pconf;

   /// The (block-diagonal) matrix R (restriction of dof to true dof). Owned.
   mutable SparseMatrix *R;

   ParNURBSExtension *pNURBSext() const
   { return dynamic_cast<ParNURBSExtension *>(NURBSext); }

   static ParNURBSExtension *MakeLocalNURBSext(
      const NURBSExtension *globNURBSext, const NURBSExtension *parNURBSext);

   GroupTopology &GetGroupTopo() const
   { return (NURBSext) ? pNURBSext()->gtopo : pmesh->gtopo; }

   // Auxiliary method used in constructors
   void ParInit(ParMesh *pm);

   void Construct();
   void Destroy();

   // ldof_type = 0 : DOFs communicator, otherwise VDOFs communicator
   void GetGroupComm(GroupCommunicator &gcomm, int ldof_type,
                     Array<int> *ldof_sign = NULL);

   /// Construct dof_offsets and tdof_offsets using global communication.
   void GenerateGlobalOffsets() const;

   /// Construct ldof_group and ldof_ltdof.
   void ConstructTrueDofs();
   void ConstructTrueNURBSDofs();

   void ApplyLDofSigns(Array<int> &dofs) const;
   void ApplyLDofSigns(Table &el_dof) const;

   typedef NCMesh::MeshId MeshId;
   typedef ParNCMesh::GroupId GroupId;

   void GetGhostVertexDofs(const MeshId &id, Array<int> &dofs) const;
   void GetGhostEdgeDofs(const MeshId &edge_id, Array<int> &dofs) const;
   void GetGhostFaceDofs(const MeshId &face_id, Array<int> &dofs) const;

   void GetGhostDofs(int entity, const MeshId &id, Array<int> &dofs) const;
   // Return the dofs associated with the interior of the given mesh entity.
   // The MeshId may be the id of a regular or a ghost mesh entity.
   void GetBareDofs(int entity, const MeshId &id, Array<int> &dofs) const;

   int  PackDof(int entity, int index, int edof) const;
   void UnpackDof(int dof, int &entity, int &index, int &edof) const;

   void ScheduleSendRow(const struct PMatrixRow &row, int dof, GroupId group_id,
                        std::map<int, class NeighborRowMessage> &send_msg) const;

   void ForwardRow(const struct PMatrixRow &row, int dof,
                   GroupId group_sent_id, GroupId group_id,
                   std::map<int, class NeighborRowMessage> &send_msg) const;

#ifdef MFEM_DEBUG_PMATRIX
   void DebugDumpDOFs(std::ofstream &os,
                      const SparseMatrix &deps,
                      const Array<GroupId> &dof_group,
                      const Array<GroupId> &dof_owner,
                      const Array<bool> &finalized) const;
#endif

   /// Helper: create a HypreParMatrix from a list of PMatrixRows.
   HypreParMatrix*
   MakeVDimHypreMatrix(const std::vector<struct PMatrixRow> &rows,
                       int local_rows, int local_cols,
                       Array<HYPRE_Int> &row_starts,
                       Array<HYPRE_Int> &col_starts) const;

   /// Build the P and R matrices.
   void Build_Dof_TrueDof_Matrix() const;

   /** Used when the ParMesh is non-conforming, i.e. pmesh->pncmesh != NULL.
       Constructs the matrices P and R, the DOF and true DOF offset arrays,
       and the DOF -> true DOF map ('dof_tdof'). Returns the number of
       vector true DOFs. All pointer arguments are optional and can be NULL. */
   int BuildParallelConformingInterpolation(HypreParMatrix **P, SparseMatrix **R,
                                            Array<HYPRE_Int> &dof_offs,
                                            Array<HYPRE_Int> &tdof_offs,
                                            Array<int> *dof_tdof,
                                            bool partial = false) const;

   /** Calculate a GridFunction migration matrix after mesh load balancing.
       The result is a parallel permutation matrix that can be used to update
       all grid functions defined on this space. */
   HypreParMatrix* RebalanceMatrix(int old_ndofs,
                                   const Table* old_elem_dof);

   /** Calculate a GridFunction restriction matrix after mesh derefinement.
       The matrix is constructed so that the new grid function interpolates
       the original function, i.e., the original function is evaluated at the
       nodes of the coarse function. */
   HypreParMatrix* ParallelDerefinementMatrix(int old_ndofs,
                                              const Table *old_elem_dof);

public:
   // Face-neighbor data
   // Number of face-neighbor dofs
   int num_face_nbr_dofs;
   // Face-neighbor-element to face-neighbor dof
   Table face_nbr_element_dof;
   // Face-neighbor to ldof in the face-neighbor numbering
   Table face_nbr_ldof;
   // The global ldof indices of the face-neighbor dofs
   Array<HYPRE_Int> face_nbr_glob_dof_map;
   // Local face-neighbor data: face-neighbor to ldof
   Table send_face_nbr_ldof;

   /** @brief Copy constructor: deep copy all data from @a orig except the
       ParMesh, the FiniteElementCollection, and some derived data. */
   /** If the @a pmesh or @a fec poiters are NULL (default), then the new
       ParFiniteElementSpace will reuse the respective pointers from @a orig. If
       any of these pointers is not NULL, the given pointer will be used instead
       of the one used by @a orig.

       @note The objects pointed to by the @a pmesh and @a fec parameters must
       be either the same objects as the ones used by @a orig, or copies of
       them. Otherwise, the behavior is undefined.

       @note Derived data objects, such as the parallel prolongation and
       restriction operators, the update operator, and any of the face-neighbor
       data, will not be copied, even if they are created in the @a orig object.
   */
   ParFiniteElementSpace(const ParFiniteElementSpace &orig,
                         ParMesh *pmesh = NULL,
                         const FiniteElementCollection *fec = NULL);

   /** @brief Convert/copy the *local* (Par)FiniteElementSpace @a orig to
       ParFiniteElementSpace: deep copy all data from @a orig except the Mesh,
       the FiniteElementCollection, and some derived data. */
   ParFiniteElementSpace(const FiniteElementSpace &orig, ParMesh &pmesh,
                         const FiniteElementCollection *fec = NULL);

   /** @brief Construct the *local* ParFiniteElementSpace corresponing to the
       global FE space, @a global_fes. */
   /** The parameter @a pm is the *local* ParMesh obtained by decomposing the
       global Mesh used by @a global_fes. The array @a partitioning represents
       the parallel decomposition - it maps global element ids to MPI ranks.
       If the FiniteElementCollection, @a f, is NULL (default), the FE
       collection used by @a global_fes will be reused. If @a f is not NULL, it
       must be the same as, or a copy of, the FE collection used by
       @a global_fes. */
   ParFiniteElementSpace(ParMesh *pm, const FiniteElementSpace *global_fes,
                         const int *partitioning,
                         const FiniteElementCollection *f = NULL);

   ParFiniteElementSpace(ParMesh *pm, const FiniteElementCollection *f,
                         int dim = 1, int ordering = Ordering::byNODES);

   /// Construct a NURBS FE space based on the given NURBSExtension, @a ext.
   /** The parameter @a ext will be deleted by this constructor, replaced by a
       ParNURBSExtension owned by the ParFiniteElementSpace.
       @note If the pointer @a ext is NULL, this constructor is equivalent to
       the standard constructor with the same arguments minus the
       NURBSExtension, @a ext. */
   ParFiniteElementSpace(ParMesh *pm, NURBSExtension *ext,
                         const FiniteElementCollection *f,
                         int dim = 1, int ordering = Ordering::byNODES);

   MPI_Comm GetComm() const { return MyComm; }
   int GetNRanks() const { return NRanks; }
   int GetMyRank() const { return MyRank; }

   inline ParMesh *GetParMesh() { return pmesh; }

   int GetDofSign(int i)
   { return NURBSext || Nonconforming() ? 1 : ldof_sign[VDofToDof(i)]; }
   HYPRE_Int *GetDofOffsets()     const { return dof_offsets; }
   HYPRE_Int *GetTrueDofOffsets() const { return tdof_offsets; }
   HYPRE_Int GlobalVSize() const
   { return Dof_TrueDof_Matrix()->GetGlobalNumRows(); }
   HYPRE_Int GlobalTrueVSize() const
   { return Dof_TrueDof_Matrix()->GetGlobalNumCols(); }

   /// Return the number of local vector true dofs.
   virtual int GetTrueVSize() const { return ltdof_size; }

   /// Returns indexes of degrees of freedom in array dofs for i'th element.
   virtual void GetElementDofs(int i, Array<int> &dofs) const;

   /// Returns indexes of degrees of freedom for i'th boundary element.
   virtual void GetBdrElementDofs(int i, Array<int> &dofs) const;

   /** Returns the indexes of the degrees of freedom for i'th face
       including the dofs for the edges and the vertices of the face. */
   virtual void GetFaceDofs(int i, Array<int> &dofs) const;

   void GetSharedEdgeDofs(int group, int ei, Array<int> &dofs) const;
   void GetSharedFaceDofs(int group, int fi, Array<int> &dofs) const;

   /// The true dof-to-dof interpolation matrix
   HypreParMatrix *Dof_TrueDof_Matrix() const
   { if (!P) { Build_Dof_TrueDof_Matrix(); } return P; }

   /** @brief For a non-conforming mesh, construct and return the interpolation
       matrix from the partially conforming true dofs to the local dofs. */
   /** @note The returned pointer must be deleted by the caller. */
   HypreParMatrix *GetPartialConformingInterpolation();

   /** Create and return a new HypreParVector on the true dofs, which is
       owned by (i.e. it must be destroyed by) the calling function. */
   HypreParVector *NewTrueDofVector()
   { return (new HypreParVector(MyComm,GlobalTrueVSize(),GetTrueDofOffsets()));}

   /// Scale a vector of true dofs
   void DivideByGroupSize(double *vec);

   /// Return a reference to the internal GroupCommunicator (on VDofs)
   GroupCommunicator &GroupComm() { return *gcomm; }

   /// Return a const reference to the internal GroupCommunicator (on VDofs)
   const GroupCommunicator &GroupComm() const { return *gcomm; }

   /// Return a new GroupCommunicator on Dofs
   GroupCommunicator *ScalarGroupComm();

   /** Given an integer array on the local degrees of freedom, perform
       a bitwise OR between the shared dofs. */
   void Synchronize(Array<int> &ldof_marker) const;

   /// Determine the boundary degrees of freedom
   virtual void GetEssentialVDofs(const Array<int> &bdr_attr_is_ess,
                                  Array<int> &ess_dofs,
                                  int component = -1) const;

   /** Get a list of essential true dofs, ess_tdof_list, corresponding to the
       boundary attributes marked in the array bdr_attr_is_ess. */
   virtual void GetEssentialTrueDofs(const Array<int> &bdr_attr_is_ess,
                                     Array<int> &ess_tdof_list,
                                     int component = -1);

   /** If the given ldof is owned by the current processor, return its local
       tdof number, otherwise return -1 */
   int GetLocalTDofNumber(int ldof) const;
   /// Returns the global tdof number of the given local degree of freedom
   HYPRE_Int GetGlobalTDofNumber(int ldof) const;
   /** Returns the global tdof number of the given local degree of freedom in
       the scalar version of the current finite element space. The input should
       be a scalar local dof. */
   HYPRE_Int GetGlobalScalarTDofNumber(int sldof);

   HYPRE_Int GetMyDofOffset() const;
   HYPRE_Int GetMyTDofOffset() const;

   virtual const Operator *GetProlongationMatrix() const;
   /// Get the R matrix which restricts a local dof vector to true dof vector.
   virtual const SparseMatrix *GetRestrictionMatrix() const
   { Dof_TrueDof_Matrix(); return R; }

   // Face-neighbor functions
   void ExchangeFaceNbrData();
   int GetFaceNbrVSize() const { return num_face_nbr_dofs; }
   void GetFaceNbrElementVDofs(int i, Array<int> &vdofs) const;
   void GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const;
   const FiniteElement *GetFaceNbrFE(int i) const;
   const FiniteElement *GetFaceNbrFaceFE(int i) const;
   const HYPRE_Int *GetFaceNbrGlobalDofMap() { return face_nbr_glob_dof_map; }

   void Lose_Dof_TrueDof_Matrix();
   void LoseDofOffsets() { dof_offsets.LoseData(); }
   void LoseTrueDofOffsets() { tdof_offsets.LoseData(); }

   bool Conforming() const { return pmesh->pncmesh == NULL; }
   bool Nonconforming() const { return pmesh->pncmesh != NULL; }

   // Transfer parallel true-dof data from coarse_fes, defined on a coarse mesh,
   // to this FE space, defined on a refined mesh. See full documentation in the
   // base class, FiniteElementSpace::GetTrueTransferOperator.
   virtual void GetTrueTransferOperator(const FiniteElementSpace &coarse_fes,
                                        OperatorHandle &T) const;

   /** Reflect changes in the mesh. Calculate one of the refinement/derefinement
       /rebalance matrices, unless want_transform is false. */
   virtual void Update(bool want_transform = true);

   /// Free ParGridFunction transformation matrix (if any), to save memory.
   virtual void UpdatesFinished()
   {
      FiniteElementSpace::UpdatesFinished();
      old_dof_offsets.DeleteAll();
   }

   virtual ~ParFiniteElementSpace() { Destroy(); }

   // Obsolete, kept for backward compatibility
   int TrueVSize() const { return ltdof_size; }
};


/// Auxiliary class used by ParFiniteElementSpace.
class ConformingProlongationOperator : public Operator
{
protected:
   Array<int> external_ldofs;
   const GroupCommunicator &gc;

public:
   ConformingProlongationOperator(const ParFiniteElementSpace &pfes);

   virtual void Mult(const Vector &x, Vector &y) const;

   virtual void MultTranspose(const Vector &x, Vector &y) const;
};

}

#endif // MFEM_USE_MPI

#endif