A parallel extension of the NCMesh class. More...

#include <pncmesh.hpp>

Inheritance diagram for mfem::ParNCMesh:

Collaboration diagram for mfem::ParNCMesh:

Classes
class	ElementSet

class	ElementValueMessage

class	NeighborDerefinementMessage

class	NeighborElementRankMessage

class	NeighborRefinementMessage

class	RebalanceDofMessage

class	RebalanceMessage

Public Types
typedef short	GroupId

typedef std::vector< int >	CommGroup

Public Types inherited from mfem::NCMesh
typedef std::int64_t	RefCoord

Public Member Functions
	ParNCMesh (MPI_Comm comm, const NCMesh &ncmesh, int *part=NULL)
	Construct by partitioning a serial NCMesh. More...

	ParNCMesh (MPI_Comm comm, std::istream &input, int version, int &curved, int &is_nc)

	ParNCMesh (const ParNCMesh &other)
	Deep copy of another instance. More...

virtual	~ParNCMesh ()

virtual void	Refine (const Array< Refinement > &refinements)

virtual void	LimitNCLevel (int max_nc_level)
	Parallel version of NCMesh::LimitNCLevel. More...

virtual void	CheckDerefinementNCLevel (const Table &deref_table, Array< int > &level_ok, int max_nc_level)

virtual void	Derefine (const Array< int > &derefs)

void	Rebalance (const Array< int > *custom_partition=NULL)

int	GetNElements () const

int	GetNGhostVertices () const

int	GetNGhostEdges () const

int	GetNGhostFaces () const

int	GetNGhostElements () const

const NCList &	GetSharedVertices ()

const NCList &	GetSharedEdges ()

const NCList &	GetSharedFaces ()

const NCList &	GetSharedList (int entity)
	Helper to get shared vertices/edges/faces ('entity' == 0/1/2 resp.). More...

int	GetFaceOrientation (int index) const
	Return (shared) face orientation relative to its owner element. More...

GroupId	GetEntityOwnerId (int entity, int index)
	Return vertex/edge/face ('entity' == 0/1/2, resp.) owner. More...

GroupId	GetEntityGroupId (int entity, int index)

const CommGroup &	GetGroup (GroupId id) const
	Return a list of ranks contained in the group of the given ID. More...

bool	GroupContains (GroupId id, int rank) const
	Return true if group 'id' contains the given rank. More...

bool	IsGhost (int entity, int index) const
	Return true if the specified vertex/edge/face is a ghost. More...

int	ElementRank (int index) const

int	GetMyRank () const

void	SendRebalanceDofs (int old_ndofs, const Table &old_element_dofs, long old_global_offset, FiniteElementSpace *space)
	Use the communication pattern from last Rebalance() to send element DOFs. More...

void	RecvRebalanceDofs (Array< int > &elements, Array< long > &dofs)
	Receive element DOFs sent by SendRebalanceDofs(). More...

const Array< int > &	GetRebalanceOldIndex () const

const Array< int > &	GetDerefineOldRanks () const

template<typename Type >
void	SynchronizeDerefinementData (Array< Type > &elem_data, const Table &deref_table)

virtual void	GetBoundaryClosure (const Array< int > &bdr_attr_is_ess, Array< int > &bdr_vertices, Array< int > &bdr_edges)

virtual void	Trim ()
	Save memory by releasing all non-essential and cached data. More...

long	MemoryUsage (bool with_base=true) const
	Return total number of bytes allocated. More...

int	PrintMemoryDetail (bool with_base=true) const

void	GetDebugMesh (Mesh &debug_mesh) const

Public Member Functions inherited from mfem::NCMesh
	NCMesh (const Mesh *mesh)

	NCMesh (std::istream &input, int version, int &curved, int &is_nc)

	NCMesh (const NCMesh &other)
	Deep copy of another instance. More...

virtual	~NCMesh ()

int	Dimension () const

int	SpaceDimension () const

int	GetNVertices () const

int	GetNEdges () const

int	GetNFaces () const

const Table &	GetDerefinementTable ()

const NCList &	GetFaceList ()
	Return the current list of conforming and nonconforming faces. More...

const NCList &	GetEdgeList ()
	Return the current list of conforming and nonconforming edges. More...

const NCList &	GetVertexList ()

const NCList &	GetNCList (int entity)
	Return vertex/edge/face list (entity = 0/1/2, respectively). More...

void	MarkCoarseLevel ()

const CoarseFineTransformations &	GetRefinementTransforms ()

const CoarseFineTransformations &	GetDerefinementTransforms ()

void	ClearTransforms ()
	Free all internal data created by the above three functions. More...

void	GetEdgeVertices (const MeshId &edge_id, int vert_index[2], bool oriented=true) const
	Return Mesh vertex indices of an edge identified by 'edge_id'. More...

int	GetEdgeNCOrientation (const MeshId &edge_id) const

int	GetFaceVerticesEdges (const MeshId &face_id, int vert_index[4], int edge_index[4], int edge_orientation[4]) const

int	GetEdgeMaster (int v1, int v2) const

Geometry::Type	GetElementGeometry (int index) const
	Return element geometry type. index is the Mesh element number. More...

Geometry::Type	GetFaceGeometry (int index) const
	Return face geometry type. index is the Mesh face number. More...

int	GetNumRootElements ()
	Return the number of root elements. More...

int	GetElementDepth (int i) const
	Return the distance of leaf 'i' from the root. More...

int	GetElementSizeReduction (int i) const

void	GetElementFacesAttributes (int i, Array< int > &faces, Array< int > &fattr) const
	Return the faces and face attributes of leaf element 'i'. More...

void	Print (std::ostream &out) const
	I/O: Print the mesh in "MFEM NC mesh v1.0" format. More...

bool	IsLegacyLoaded () const
	I/O: Return true if the mesh was loaded from the legacy v1.1 format. More...

void	LegacyToNewVertexOrdering (Array< int > &order) const
	I/O: Return a map from old (v1.1) vertex indices to new vertex indices. More...

long	MemoryUsage () const
	Return total number of bytes allocated. More...

int	PrintMemoryDetail () const

void	DebugLeafOrder (std::ostream &out) const

void	DebugDump (std::ostream &out) const

Protected Types
typedef std::vector< CommGroup >	GroupList

typedef std::map< CommGroup, GroupId >	GroupMap

Protected Types inherited from mfem::NCMesh
typedef std::map< std::string, int >	RefPathMap

Protected Member Functions
void	GetConformingSharedStructures (class ParMesh &pmesh)

void	GetFaceNeighbors (class ParMesh &pmesh)

virtual void	Update ()

int	Partition (long index, long total_elements) const
	Return the processor number for a global element number. More...

int	InitialPartition (int index) const
	Helper to get the partitioning when the serial mesh gets split initially. More...

long	PartitionFirstIndex (int rank, long total_elements) const
	Return the global index of the first element owned by processor 'rank'. More...

virtual void	BuildFaceList ()

virtual void	BuildEdgeList ()

virtual void	BuildVertexList ()

virtual void	ElementSharesFace (int elem, int local, int face)

virtual void	ElementSharesEdge (int elem, int local, int enode)

virtual void	ElementSharesVertex (int elem, int local, int vnode)

GroupId	GetGroupId (const CommGroup &group)

GroupId	GetSingletonGroup (int rank)

void	InitOwners (int num, Array< GroupId > &entity_owner)

void	MakeSharedList (const NCList &list, NCList &shared)

void	AddConnections (int entity, int index, const Array< int > &ranks)

void	CalculatePMatrixGroups ()

void	CreateGroups (int nentities, Array< Connection > &index_rank, Array< GroupId > &entity_group)

void	CalcFaceOrientations ()

void	UpdateLayers ()

void	MakeSharedTable (int ngroups, int ent, Array< int > &shared_local, Table &group_shared, Array< char > *entity_geom=NULL, char geom=0)

void	AdjustMeshIds (Array< MeshId > ids[], int rank)

void	ChangeVertexMeshIdElement (NCMesh::MeshId &id, int elem)

void	ChangeEdgeMeshIdElement (NCMesh::MeshId &id, int elem)

void	ChangeRemainingMeshIds (Array< MeshId > &ids, int pos, const Array< Pair< int, int > > &find)

void	EncodeMeshIds (std::ostream &os, Array< MeshId > ids[])

void	DecodeMeshIds (std::istream &is, Array< MeshId > ids[])

void	EncodeGroups (std::ostream &os, const Array< GroupId > &ids)

void	DecodeGroups (std::istream &is, Array< GroupId > &ids)

bool	CheckElementType (int elem, int type)

void	ElementNeighborProcessors (int elem, Array< int > &ranks)

void	NeighborProcessors (Array< int > &neighbors)

void	Prune ()

bool	PruneTree (int elem)
	Internal. Recursive part of Prune(). More...

void	RedistributeElements (Array< int > &new_ranks, int target_elements, bool record_comm)

void	ClearAuxPM ()

long	GroupsMemoryUsage () const

Protected Member Functions inherited from mfem::NCMesh
void	GetMeshComponents (Mesh &mesh) const
	Fill Mesh::{vertices,elements,boundary} for the current finest level. More...

void	OnMeshUpdated (Mesh *mesh)

void	MakeTopologyOnly ()

void	UpdateLeafElements ()

void	UpdateVertices ()
	update Vertex::index and vertex_nodeId More...

void	CollectLeafElements (int elem, int state, Array< int > &ghosts, int &counter)

void	InitRootState (int root_count)

void	InitGeomFlags ()

bool	HavePrisms () const

bool	HaveTets () const

bool	IsGhost (const Element &el) const

void	RefineElement (int elem, char ref_type)

void	DerefineElement (int elem)

int	AddElement (const Element &el)

void	FreeElement (int id)

int	NewHexahedron (int n0, int n1, int n2, int n3, int n4, int n5, int n6, int n7, int attr, int fattr0, int fattr1, int fattr2, int fattr3, int fattr4, int fattr5)

int	NewWedge (int n0, int n1, int n2, int n3, int n4, int n5, int attr, int fattr0, int fattr1, int fattr2, int fattr3, int fattr4)

int	NewTetrahedron (int n0, int n1, int n2, int n3, int attr, int fattr0, int fattr1, int fattr2, int fattr3)

int	NewQuadrilateral (int n0, int n1, int n2, int n3, int attr, int eattr0, int eattr1, int eattr2, int eattr3)

int	NewTriangle (int n0, int n1, int n2, int attr, int eattr0, int eattr1, int eattr2)

int	NewSegment (int n0, int n1, int attr, int vattr1, int vattr2)

mfem::Element *	NewMeshElement (int geom) const

int	QuadFaceSplitType (int v1, int v2, int v3, int v4, int mid[5]=NULL) const

bool	TriFaceSplit (int v1, int v2, int v3, int mid[3]=NULL) const

void	ForceRefinement (int vn1, int vn2, int vn3, int vn4)

void	FindEdgeElements (int vn1, int vn2, int vn3, int vn4, Array< MeshId > &prisms) const

void	CheckAnisoPrism (int vn1, int vn2, int vn3, int vn4, const Refinement *refs, int nref)

void	CheckAnisoFace (int vn1, int vn2, int vn3, int vn4, int mid12, int mid34, int level=0)

void	CheckIsoFace (int vn1, int vn2, int vn3, int vn4, int en1, int en2, int en3, int en4, int midf)

void	ReparentNode (int node, int new_p1, int new_p2)

int	FindMidEdgeNode (int node1, int node2) const

int	GetMidEdgeNode (int node1, int node2)

int	GetMidFaceNode (int en1, int en2, int en3, int en4)

void	ReferenceElement (int elem)

void	UnreferenceElement (int elem, Array< int > &elemFaces)

Face *	GetFace (Element &elem, int face_no)

void	RegisterFaces (int elem, int *fattr=NULL)

void	DeleteUnusedFaces (const Array< int > &elemFaces)

void	CollectDerefinements (int elem, Array< Connection > &list)

int	RetrieveNode (const Element &el, int index)
	Return el.node[index] correctly, even if the element is refined. More...

int	FindNodeExt (const Element &el, int node, bool abort=true)
	Extended version of find_node: works if 'el' is refined. More...

int	ReorderFacePointMat (int v0, int v1, int v2, int v3, int elem, const PointMatrix &pm, PointMatrix &reordered) const

void	TraverseQuadFace (int vn0, int vn1, int vn2, int vn3, const PointMatrix &pm, int level, Face *eface[4], MatrixMap &matrix_map)

bool	TraverseTriFace (int vn0, int vn1, int vn2, const PointMatrix &pm, int level, MatrixMap &matrix_map)

void	TraverseTetEdge (int vn0, int vn1, const Point &p0, const Point &p1, MatrixMap &matrix_map)

void	TraverseEdge (int vn0, int vn1, double t0, double t1, int flags, int level, MatrixMap &matrix_map)

void	FindSetNeighbors (const Array< char > &elem_set, Array< int > neighbors, Array< char > neighbor_set=NULL)

void	FindNeighbors (int elem, Array< int > &neighbors, const Array< int > *search_set=NULL)

void	NeighborExpand (const Array< int > &elems, Array< int > &expanded, const Array< int > *search_set=NULL)

void	CollectEdgeVertices (int v0, int v1, Array< int > &indices)

void	CollectTriFaceVertices (int v0, int v1, int v2, Array< int > &indices)

void	CollectQuadFaceVertices (int v0, int v1, int v2, int v3, Array< int > &indices)

void	BuildElementToVertexTable ()

void	UpdateElementToVertexTable ()

int	GetVertexRootCoord (int elem, RefCoord coord[3]) const

void	CollectIncidentElements (int elem, const RefCoord coord[3], Array< int > &list) const

void	FindVertexCousins (int elem, int local, Array< int > &cousins) const

void	GetPointMatrix (Geometry::Type geom, const char *ref_path, DenseMatrix &matrix)

void	TraverseRefinements (int elem, int coarse_index, std::string &ref_path, RefPathMap &map)

void	InitDerefTransforms ()

void	SetDerefMatrixCodes (int parent, Array< int > &fine_coarse)

const double *	CalcVertexPos (int node) const

int	GetEdgeMaster (int node) const

void	FindFaceNodes (int face, int node[4])

int	EdgeSplitLevel (int vn1, int vn2) const

int	TriFaceSplitLevel (int vn1, int vn2, int vn3) const

void	QuadFaceSplitLevel (int vn1, int vn2, int vn3, int vn4, int &h_level, int &v_level) const

void	CountSplits (int elem, int splits[3]) const

void	GetLimitRefinements (Array< Refinement > &refinements, int max_level)

int	PrintVertexParents (std::ostream *out) const
	Print the "vertex_parents" section of the mesh file. More...

void	LoadVertexParents (std::istream &input)
	Load the vertex parent hierarchy from a mesh file. More...

int	PrintBoundary (std::ostream *out) const

void	LoadBoundary (std::istream &input)
	Load the "boundary" section of the mesh file. More...

void	PrintCoordinates (std::ostream &out) const
	Print the "coordinates" section of the mesh file. More...

void	LoadCoordinates (std::istream &input)
	Load the "coordinates" section of the mesh file. More...

void	InitRootElements ()
	Count root elements and initialize root_state. More...

int	CountTopLevelNodes () const
	Return the index of the last top-level node plus one. More...

bool	ZeroRootStates () const
	Return true if all root_states are zero. More...

void	LoadCoarseElements (std::istream &input)
	Load the element refinement hierarchy from a legacy mesh file. More...

void	CopyElements (int elem, const BlockArray< Element > &tmp_elements)

void	LoadLegacyFormat (std::istream &input, int &curved, int &is_nc)
	Load the deprecated MFEM mesh v1.1 format for backward compatibility. More...

Static Protected Member Functions
static int	get_face_orientation (Face &face, Element &e1, Element &e2, int local[2]=NULL)

Static Protected Member Functions inherited from mfem::NCMesh
static int	find_node (const Element &el, int node)

static int	find_element_edge (const Element &el, int vn0, int vn1, bool abort=true)

static int	find_local_face (int geom, int a, int b, int c)

static const PointMatrix &	GetGeomIdentity (Geometry::Type geom)

Protected Attributes
MPI_Comm	MyComm

int	NRanks

GroupList	groups

GroupMap	group_id

Array< GroupId >	entity_owner [3]

Array< GroupId >	entity_pmat_group [3]

Array< GroupId >	entity_conf_group [3]

Array< int >	entity_elem_local [3]

NCList	shared_vertices

NCList	shared_edges

NCList	shared_faces

Array< char >	face_orient

Array< char >	element_type

Array< int >	ghost_layer
	list of elements whose 'element_type' == 2. More...

Array< int >	boundary_layer
	list of type 3 elements More...

Array< int >	tmp_owner

Array< char >	tmp_shared_flag

Array< Connection >	entity_index_rank [3]

Array< int >	tmp_neighbors

RebalanceDofMessage::Map	send_rebalance_dofs

RebalanceDofMessage::Map	recv_rebalance_dofs

Array< int >	old_index_or_rank

Array< DenseMatrix * >	aux_pm_store
	Stores modified point matrices created by GetFaceNeighbors. More...

Protected Attributes inherited from mfem::NCMesh
int	Dim

int	spaceDim
	dimensions of the elements and the vertex coordinates More...

int	MyRank
	used in parallel, or when loading a parallel file in serial More...

bool	Iso
	true if the mesh only contains isotropic refinements More...

int	Geoms
	bit mask of element geometries present, see InitGeomFlags() More...

bool	Legacy
	true if the mesh was loaded from the legacy v1.1 format More...

HashTable< Node >	nodes

HashTable< Face >	faces

BlockArray< Element >	elements

Array< int >	free_element_ids

Array< int >	root_state

Array< double >	coordinates

int	NElements

int	NVertices

int	NEdges

int	NFaces

int	NGhostElements

int	NGhostVertices

int	NGhostEdges

int	NGhostFaces

Array< int >	leaf_elements
	finest elements, in Mesh ordering (+ ghosts) More...

Array< int >	leaf_sfc_index
	natural tree ordering of leaf elements More...

Array< int >	vertex_nodeId
	vertex-index to node-id map, see UpdateVertices More...

NCList	face_list
	lazy-initialized list of faces, see GetFaceList More...

NCList	edge_list
	lazy-initialized list of edges, see GetEdgeList More...

NCList	vertex_list
	lazy-initialized list of vertices, see GetVertexList More...

Array< int >	boundary_faces
	subset of all faces, set by BuildFaceList More...

Array< char >	face_geom
	face geometry by face index, set by OnMeshUpdated More...

Table	element_vertex
	leaf-element to vertex table, see FindSetNeighbors More...

Array< Refinement >	ref_stack
	stack of scheduled refinements (temporary) More...

HashTable< Node >	shadow
	temporary storage for reparented nodes More...

Array< Triple< int, int, int > >	reparents
	scheduled node reparents (tmp) More...

Table	derefinements
	possible derefinements, see GetDerefinementTable More...

CoarseFineTransformations	transforms
	storage for data returned by Get[De]RefinementTransforms() More...

Array< int >	coarse_elements
	state of leaf_elements before Refine(), set by MarkCoarseLevel() More...

TmpVertex *	tmp_vertex

Friends
class	ParMesh

class	NeighborRowMessage

Additional Inherited Members
Static Public Member Functions inherited from mfem::NCMesh
static void	GridSfcOrdering2D (int width, int height, Array< int > &coords)

static void	GridSfcOrdering3D (int width, int height, int depth, Array< int > &coords)

Static Protected Attributes inherited from mfem::NCMesh
static PointMatrix	pm_seg_identity

static PointMatrix	pm_tri_identity

static PointMatrix	pm_quad_identity

static PointMatrix	pm_tet_identity

static PointMatrix	pm_prism_identity

static PointMatrix	pm_hex_identity

static GeomInfo	GI [Geometry::NumGeom]

Detailed Description

A parallel extension of the NCMesh class.

The basic idea (and assumption) is that all processors share the coarsest layer ("root elements"). This has the advantage that refinements can easily be exchanged between processors when rebalancing since individual elements can be uniquely identified by the index of the root element and a path in the refinement tree.

Each leaf element is owned by one of the processors (NCMesh::Element::rank). The underlying NCMesh stores not only elements for the current ('MyRank') processor, but also a minimal layer of adjacent "ghost" elements owned by other processors. The ghost layer is synchronized after refinement.

The ghost layer contains all vertex-, edge- and face-neighbors of the current processor's region. It is used to determine constraining relations and ownership of DOFs on the processor boundary. Ghost elements are never seen by the rest of MFEM as they are skipped when a Mesh is created from the NCMesh.

The processor that owns a vertex, edge or a face (and in turn its DOFs) is currently defined to be the one with the lowest rank in the group of processors that share the entity.

Vertices, edges and faces that are not owned by this ('MyRank') processor are ghosts, and are numbered after all real vertices/edges/faces, i.e., they have indices greater than NVertices, NEdges, NFaces, respectively.

A shared vertex/edge/face is identified in an interprocessor message by a pair of numbers. The first number specifies an element in an ElementSet (typically sent at the beginning of the message) that contains the v/e/f. The second number is the local index of the v/e/f in that element.

Definition at line 64 of file pncmesh.hpp.

Member Typedef Documentation

typedef std::vector<int> mfem::ParNCMesh::CommGroup

Definition at line 140 of file pncmesh.hpp.

typedef short mfem::ParNCMesh::GroupId

Definition at line 139 of file pncmesh.hpp.

typedef std::vector<CommGroup> mfem::ParNCMesh::GroupList

protected

Definition at line 266 of file pncmesh.hpp.

typedef std::map<CommGroup, GroupId> mfem::ParNCMesh::GroupMap

protected

Definition at line 267 of file pncmesh.hpp.

Constructor & Destructor Documentation

mfem::ParNCMesh::ParNCMesh	(	MPI_Comm	comm,
		const NCMesh &	ncmesh,
		int *	part = `NULL`
	)

Construct by partitioning a serial NCMesh.

SFC partitioning is used by default. A user-specified partition can be passed in 'part', where part[i] is the desired MPI rank for element i.

Definition at line 28 of file pncmesh.cpp.

mfem::ParNCMesh::ParNCMesh	(	MPI_Comm	comm,
		std::istream &	input,
		int	version,
		int &	curved,
		int &	is_nc
	)

Load from a stream, parallel version. See the serial NCMesh::NCMesh counterpart for a description of the parameters.

Definition at line 49 of file pncmesh.cpp.

mfem::ParNCMesh::ParNCMesh ( const ParNCMesh & other )

Deep copy of another instance.

Definition at line 76 of file pncmesh.cpp.

mfem::ParNCMesh::~ParNCMesh ( )

virtual

Definition at line 85 of file pncmesh.cpp.

Member Function Documentation

void mfem::ParNCMesh::AddConnections	(	int	entity,
		int	index,
		const Array< int > &	ranks
	)

protected

Definition at line 461 of file pncmesh.cpp.

void mfem::ParNCMesh::AdjustMeshIds	(	Array< MeshId >	ids[],
		int	rank
	)

protected

Adjust some of the MeshIds before encoding for recipient 'rank', so that they only reference elements that exist in the recipient's ref. tree.

Definition at line 2242 of file pncmesh.cpp.

void mfem::ParNCMesh::BuildEdgeList ( )

protectedvirtual

Reimplemented from mfem::NCMesh.

Definition at line 208 of file pncmesh.cpp.

void mfem::ParNCMesh::BuildFaceList ( )

protectedvirtual

Reimplemented from mfem::NCMesh.

Definition at line 141 of file pncmesh.cpp.

void mfem::ParNCMesh::BuildVertexList ( )

protectedvirtual

Reimplemented from mfem::NCMesh.

Definition at line 269 of file pncmesh.cpp.

void mfem::ParNCMesh::CalcFaceOrientations ( )

protected

Definition at line 572 of file pncmesh.cpp.

void mfem::ParNCMesh::CalculatePMatrixGroups ( )

protected

Definition at line 469 of file pncmesh.cpp.

void mfem::ParNCMesh::ChangeEdgeMeshIdElement	(	NCMesh::MeshId &	id,
		int	elem
	)

protected

Definition at line 2343 of file pncmesh.cpp.

void mfem::ParNCMesh::ChangeRemainingMeshIds	(	Array< MeshId > &	ids,
		int	pos,
		const Array< Pair< int, int > > &	find
	)

protected

Definition at line 2369 of file pncmesh.cpp.

void mfem::ParNCMesh::ChangeVertexMeshIdElement	(	NCMesh::MeshId &	id,
		int	elem
	)

protected

Definition at line 2325 of file pncmesh.cpp.

void mfem::ParNCMesh::CheckDerefinementNCLevel	(	const Table &	deref_table,
		Array< int > &	level_ok,
		int	max_nc_level
	)

virtual

Parallel version of NCMesh::CheckDerefinementNCLevel.

Reimplemented from mfem::NCMesh.

Definition at line 1594 of file pncmesh.cpp.

bool mfem::ParNCMesh::CheckElementType	(	int	elem,
		int	type
	)

protected

Definition at line 661 of file pncmesh.cpp.

void mfem::ParNCMesh::ClearAuxPM ( )

protected

Definition at line 1163 of file pncmesh.cpp.

void mfem::ParNCMesh::CreateGroups	(	int	nentities,
		Array< Connection > &	index_rank,
		Array< GroupId > &	entity_group
	)

protected

Definition at line 427 of file pncmesh.cpp.

void mfem::ParNCMesh::DecodeGroups	(	std::istream &	is,
		Array< GroupId > &	ids
	)

protected

Definition at line 2523 of file pncmesh.cpp.

void mfem::ParNCMesh::DecodeMeshIds	(	std::istream &	is,
		Array< MeshId >	ids[]
	)

protected

Definition at line 2424 of file pncmesh.cpp.

void mfem::ParNCMesh::Derefine ( const Array< int > & derefs )

virtual

Parallel reimplementation of NCMesh::Derefine, keeps ghost layers in sync. The interface is identical.

Reimplemented from mfem::NCMesh.

Definition at line 1342 of file pncmesh.cpp.

void mfem::ParNCMesh::ElementNeighborProcessors	(	int	elem,
		Array< int > &	ranks
	)

protected

Return a list of processors that own elements in the immediate neighborhood of 'elem' (i.e., vertex, edge and face neighbors), and are not 'MyRank'.

Definition at line 678 of file pncmesh.cpp.

int mfem::ParNCMesh::ElementRank ( int index ) const

inline

Returns owner processor for element 'index'. This is normally MyRank but for index >= NElements (i.e., for ghosts) it may be something else.

Definition at line 197 of file pncmesh.hpp.

void mfem::ParNCMesh::ElementSharesEdge	(	int	elem,
		int	local,
		int	enode
	)

protectedvirtual

Reimplemented from mfem::NCMesh.

Definition at line 183 of file pncmesh.cpp.

void mfem::ParNCMesh::ElementSharesFace	(	int	elem,
		int	local,
		int	face
	)

protectedvirtual

Reimplemented from mfem::NCMesh.

Definition at line 118 of file pncmesh.cpp.

void mfem::ParNCMesh::ElementSharesVertex	(	int	elem,
		int	local,
		int	vnode
	)

protectedvirtual

Reimplemented from mfem::NCMesh.

Definition at line 246 of file pncmesh.cpp.

void mfem::ParNCMesh::EncodeGroups	(	std::ostream &	os,
		const Array< GroupId > &	ids
	)

protected

Definition at line 2481 of file pncmesh.cpp.

void mfem::ParNCMesh::EncodeMeshIds	(	std::ostream &	os,
		Array< MeshId >	ids[]
	)

protected

Definition at line 2381 of file pncmesh.cpp.

int mfem::ParNCMesh::get_face_orientation	(	Face &	face,
		Element &	e1,
		Element &	e2,
		int	local[2] = `NULL`
	)

staticprotected

Definition at line 543 of file pncmesh.cpp.

void mfem::ParNCMesh::GetBoundaryClosure	(	const Array< int > &	bdr_attr_is_ess,
		Array< int > &	bdr_vertices,
		Array< int > &	bdr_edges
	)

virtual

Extension of NCMesh::GetBoundaryClosure. Filters out ghost vertices and ghost edges from 'bdr_vertices' and 'bdr_edges'.

Reimplemented from mfem::NCMesh.

Definition at line 598 of file pncmesh.cpp.

void mfem::ParNCMesh::GetConformingSharedStructures ( class ParMesh & pmesh )

protected

For compatibility with conforming code in ParMesh and ParFESpace. Initializes shared structures in ParMesh: gtopo, shared_*, group_s*, s*_l*. The ParMesh then acts as a parallel mesh cut along the NC interfaces.

Definition at line 787 of file pncmesh.cpp.

void mfem::ParNCMesh::GetDebugMesh ( Mesh & debug_mesh ) const

Extract a debugging Mesh containing all leaf elements, including ghosts. The debug mesh will have element attributes set to element rank + 1.

Definition at line 2687 of file pncmesh.cpp.

const Array<int>& mfem::ParNCMesh::GetDerefineOldRanks ( ) const

inline

Get previous (pre-Derefine) fine element ranks. This complements the CoarseFineTransformations::embeddings array in parallel.

Definition at line 220 of file pncmesh.hpp.

GroupId mfem::ParNCMesh::GetEntityGroupId	(	int	entity,
		int	index
	)

inline

Return the P matrix communication group ID for a vertex/edge/face. The groups are calculated specifically to match the P matrix construction algorithm and its communication pattern.

Definition at line 157 of file pncmesh.hpp.

GroupId mfem::ParNCMesh::GetEntityOwnerId	(	int	entity,
		int	index
	)

inline

Return vertex/edge/face ('entity' == 0/1/2, resp.) owner.

Definition at line 143 of file pncmesh.hpp.

void mfem::ParNCMesh::GetFaceNeighbors ( class ParMesh & pmesh )

protected

Populate face neighbor members of ParMesh from the ghost layer, without communication.

Definition at line 886 of file pncmesh.cpp.

int mfem::ParNCMesh::GetFaceOrientation ( int index ) const

inline

Return (shared) face orientation relative to its owner element.

Definition at line 134 of file pncmesh.hpp.

const CommGroup& mfem::ParNCMesh::GetGroup ( GroupId id ) const

inline

Return a list of ranks contained in the group of the given ID.

Definition at line 169 of file pncmesh.hpp.

ParNCMesh::GroupId mfem::ParNCMesh::GetGroupId ( const CommGroup & group )

protected

Definition at line 391 of file pncmesh.cpp.

int mfem::ParNCMesh::GetMyRank ( ) const

inline

Definition at line 205 of file pncmesh.hpp.

int mfem::ParNCMesh::GetNElements ( ) const

inline

Definition at line 109 of file pncmesh.hpp.

int mfem::ParNCMesh::GetNGhostEdges ( ) const

inline

Definition at line 112 of file pncmesh.hpp.

int mfem::ParNCMesh::GetNGhostElements ( ) const

inline

Definition at line 114 of file pncmesh.hpp.

int mfem::ParNCMesh::GetNGhostFaces ( ) const

inline

Definition at line 113 of file pncmesh.hpp.

int mfem::ParNCMesh::GetNGhostVertices ( ) const

inline

Definition at line 111 of file pncmesh.hpp.

const Array<int>& mfem::ParNCMesh::GetRebalanceOldIndex ( ) const

inline

Get previous indices (pre-Rebalance) of current elements. Index of -1 indicates that an element didn't exist in the mesh before.

Definition at line 216 of file pncmesh.hpp.

const NCList& mfem::ParNCMesh::GetSharedEdges ( )

inline

Definition at line 119 of file pncmesh.hpp.

const NCList& mfem::ParNCMesh::GetSharedFaces ( )

inline

Definition at line 120 of file pncmesh.hpp.

const NCList& mfem::ParNCMesh::GetSharedList ( int entity )

inline

Helper to get shared vertices/edges/faces ('entity' == 0/1/2 resp.).

Definition at line 123 of file pncmesh.hpp.

const NCList& mfem::ParNCMesh::GetSharedVertices ( )

inline

Definition at line 118 of file pncmesh.hpp.

ParNCMesh::GroupId mfem::ParNCMesh::GetSingletonGroup ( int rank )

protected

Definition at line 407 of file pncmesh.cpp.

bool mfem::ParNCMesh::GroupContains	(	GroupId	id,
		int	rank
	)		const

Return true if group 'id' contains the given rank.

Definition at line 416 of file pncmesh.cpp.

long mfem::ParNCMesh::GroupsMemoryUsage ( ) const

protected

Definition at line 2745 of file pncmesh.cpp.

int mfem::ParNCMesh::InitialPartition ( int index ) const

inlineprotected

Helper to get the partitioning when the serial mesh gets split initially.

Definition at line 305 of file pncmesh.hpp.

void mfem::ParNCMesh::InitOwners	(	int	num,
		Array< GroupId > &	entity_owner
	)

protected

Definition at line 301 of file pncmesh.cpp.

bool mfem::ParNCMesh::IsGhost	(	int	entity,
		int	index
	)		const

inline

Return true if the specified vertex/edge/face is a ghost.

Definition at line 179 of file pncmesh.hpp.

void mfem::ParNCMesh::LimitNCLevel ( int max_nc_level )

virtual

Parallel version of NCMesh::LimitNCLevel.

Reimplemented from mfem::NCMesh.

Definition at line 1324 of file pncmesh.cpp.

void mfem::ParNCMesh::MakeSharedList	(	const NCList &	list,
		NCList &	shared
	)

protected

Definition at line 311 of file pncmesh.cpp.

void mfem::ParNCMesh::MakeSharedTable	(	int	ngroups,
		int	ent,
		Array< int > &	shared_local,
		Table &	group_shared,
		Array< char > *	entity_geom = `NULL`,
		char	geom = `0`
	)

protected

Definition at line 727 of file pncmesh.cpp.

long mfem::ParNCMesh::MemoryUsage ( bool with_base = true ) const

Return total number of bytes allocated.

Definition at line 2768 of file pncmesh.cpp.

void mfem::ParNCMesh::NeighborProcessors ( Array< int > & neighbors )

protected

Get a list of ranks that own elements in the neighborhood of our region. NOTE: MyRank is not included.

Definition at line 710 of file pncmesh.cpp.

int mfem::ParNCMesh::Partition	(	long	index,
		long	total_elements
	)		const

inlineprotected

Return the processor number for a global element number.

Definition at line 301 of file pncmesh.hpp.

long mfem::ParNCMesh::PartitionFirstIndex	(	int	rank,
		long	total_elements
	)		const

inlineprotected

Return the global index of the first element owned by processor 'rank'.

Definition at line 309 of file pncmesh.hpp.

int mfem::ParNCMesh::PrintMemoryDetail ( bool with_base = true ) const

Definition at line 2802 of file pncmesh.cpp.

void mfem::ParNCMesh::Prune ( )

protected

Traverse the (local) refinement tree and determine which subtrees are no longer needed, i.e., their leaves are not owned by us nor are they our ghosts. These subtrees are then derefined.

Definition at line 1212 of file pncmesh.cpp.

bool mfem::ParNCMesh::PruneTree ( int elem )

protected

Internal. Recursive part of Prune().

Definition at line 1175 of file pncmesh.cpp.

void mfem::ParNCMesh::Rebalance ( const Array< int > * custom_partition = NULL )

Migrate leaf elements of the global refinement hierarchy (including ghost elements) so that each processor owns the same number of leaves (+-1). The default partitioning strategy is based on equal splitting of the space-filling sequence of leaf elements (custom_partition == NULL). Alternatively, a used-defined element-rank assignment array can be passed.

Definition at line 1652 of file pncmesh.cpp.

void mfem::ParNCMesh::RecvRebalanceDofs	(	Array< int > &	elements,
		Array< long > &	dofs
	)

Receive element DOFs sent by SendRebalanceDofs().

Definition at line 2021 of file pncmesh.cpp.

void mfem::ParNCMesh::RedistributeElements	(	Array< int > &	new_ranks,
		int	target_elements,
		bool	record_comm
	)

protected

Assign new Element::rank to leaf elements and send them to their new owners, keeping the ghost layer up to date. Used by Rebalance() and Derefine(). 'target_elements' is the number of elements this rank is supposed to own after the exchange. If this number is not known a priori, the parameter can be set to -1, but more expensive communication (synchronous sends and a barrier) will be used in that case.

Definition at line 1713 of file pncmesh.cpp.

void mfem::ParNCMesh::Refine ( const Array< Refinement > & refinements )

virtual

An override of NCMesh::Refine, which is called eventually, after making sure that refinements that occur on the processor boundary are sent to the neighbor processors so they can keep their ghost layers up to date.

Reimplemented from mfem::NCMesh.

Definition at line 1246 of file pncmesh.cpp.

void mfem::ParNCMesh::SendRebalanceDofs	(	int	old_ndofs,
		const Table &	old_element_dofs,
		long	old_global_offset,
		FiniteElementSpace *	space
	)

Use the communication pattern from last Rebalance() to send element DOFs.

Definition at line 1988 of file pncmesh.cpp.

template<typename Type >

template void mfem::ParNCMesh::SynchronizeDerefinementData< double >	(	Array< Type > &	elem_data,
		const Table &	deref_table
	)

Exchange element data for derefinements that straddle processor boundaries. 'elem_data' is enlarged and filled with ghost values.

Definition at line 1514 of file pncmesh.cpp.

void mfem::ParNCMesh::Trim ( )

virtual

Save memory by releasing all non-essential and cached data.

Reimplemented from mfem::NCMesh.

Definition at line 2704 of file pncmesh.cpp.

void mfem::ParNCMesh::Update ( )

protectedvirtual

Apart from the primary data structure, which is the element/node/face hierarchy, there is secondary data that is derived from the primary data and needs to be updated when the primary data changes. Update() takes care of that and needs to be called after each refinement and derefinement.

Reimplemented from mfem::NCMesh.

Definition at line 90 of file pncmesh.cpp.

void mfem::ParNCMesh::UpdateLayers ( )

protected

Definition at line 623 of file pncmesh.cpp.

Friends And Related Function Documentation

friend class NeighborRowMessage

friend

Definition at line 541 of file pncmesh.hpp.

friend class ParMesh

friend

Definition at line 249 of file pncmesh.hpp.

Member Data Documentation

Array<DenseMatrix*> mfem::ParNCMesh::aux_pm_store

protected

Stores modified point matrices created by GetFaceNeighbors.

Definition at line 536 of file pncmesh.hpp.

Array<int> mfem::ParNCMesh::boundary_layer

protected

list of type 3 elements

Definition at line 296 of file pncmesh.hpp.

Array<char> mfem::ParNCMesh::element_type

protected

Type of each leaf element: 1 - our element (rank == MyRank), 3 - our element, and neighbor to the ghost layer, 2 - ghost layer element (existing element, but rank != MyRank), 0 - element beyond the ghost layer, may not be a real element. Note: indexed by Element::index. See also UpdateLayers().

Definition at line 293 of file pncmesh.hpp.

Array<GroupId> mfem::ParNCMesh::entity_conf_group[3]

protected

Definition at line 278 of file pncmesh.hpp.

Array<int> mfem::ParNCMesh::entity_elem_local[3]

protected

Definition at line 280 of file pncmesh.hpp.

Array<Connection> mfem::ParNCMesh::entity_index_rank[3]

protected

Definition at line 325 of file pncmesh.hpp.

Array<GroupId> mfem::ParNCMesh::entity_owner[3]

protected

Definition at line 273 of file pncmesh.hpp.

Array<GroupId> mfem::ParNCMesh::entity_pmat_group[3]

protected

Definition at line 275 of file pncmesh.hpp.

Array<char> mfem::ParNCMesh::face_orient

protected

Definition at line 285 of file pncmesh.hpp.

Array<int> mfem::ParNCMesh::ghost_layer

protected

list of elements whose 'element_type' == 2.

Definition at line 295 of file pncmesh.hpp.

GroupMap mfem::ParNCMesh::group_id

protected

Definition at line 270 of file pncmesh.hpp.

GroupList mfem::ParNCMesh::groups

protected

Definition at line 269 of file pncmesh.hpp.

MPI_Comm mfem::ParNCMesh::MyComm

protected

Definition at line 263 of file pncmesh.hpp.

int mfem::ParNCMesh::NRanks

protected

Definition at line 264 of file pncmesh.hpp.

Array<int> mfem::ParNCMesh::old_index_or_rank

protected

After Rebalance, this array holds the old element indices, or -1 if an element didn't exist in the mesh previously. After Derefine, it holds the ranks of the old (potentially non-existent) fine elements.

Definition at line 533 of file pncmesh.hpp.

RebalanceDofMessage::Map mfem::ParNCMesh::recv_rebalance_dofs

protected

Definition at line 528 of file pncmesh.hpp.

RebalanceDofMessage::Map mfem::ParNCMesh::send_rebalance_dofs

protected

Recorded communication pattern from last Rebalance. Used by Send/RecvRebalanceDofs to ship element DOFs.

Definition at line 527 of file pncmesh.hpp.

NCList mfem::ParNCMesh::shared_edges

protected

Definition at line 283 of file pncmesh.hpp.

NCList mfem::ParNCMesh::shared_faces

protected

Definition at line 283 of file pncmesh.hpp.

NCList mfem::ParNCMesh::shared_vertices

protected

Definition at line 283 of file pncmesh.hpp.

Array<int> mfem::ParNCMesh::tmp_neighbors

protected

Definition at line 404 of file pncmesh.hpp.

Array<int> mfem::ParNCMesh::tmp_owner

protected

Definition at line 323 of file pncmesh.hpp.

Array<char> mfem::ParNCMesh::tmp_shared_flag

protected

Definition at line 324 of file pncmesh.hpp.

The documentation for this class was generated from the following files:

mesh/pncmesh.hpp
mesh/pncmesh.cpp

Classes

Public Types

Public Member Functions

Protected Types

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Friends

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Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation