MFEM
v4.2.0
Finite element discretization library
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#include <vector.hpp>
Public Member Functions | |
Vector () | |
Default constructor for Vector. Sets size = 0 and data = NULL. More... | |
Vector (const Vector &) | |
Copy constructor. Allocates a new data array and copies the data. More... | |
Vector (int s) | |
Creates vector of size s. More... | |
Vector (double *_data, int _size) | |
Creates a vector referencing an array of doubles, owned by someone else. More... | |
Vector (int size_, MemoryType mt) | |
Create a Vector of size size_ using MemoryType mt. More... | |
void | UseDevice (bool use_dev) const |
Enable execution of Vector operations using the mfem::Device. More... | |
bool | UseDevice () const |
Return the device flag of the Memory object used by the Vector. More... | |
void | Load (std::istream **in, int np, int *dim) |
Reads a vector from multiple files. More... | |
void | Load (std::istream &in, int Size) |
Load a vector from an input stream. More... | |
void | Load (std::istream &in) |
Load a vector from an input stream, reading the size from the stream. More... | |
void | SetSize (int s) |
Resize the vector to size s. More... | |
void | SetSize (int s, MemoryType mt) |
Resize the vector to size s using MemoryType mt. More... | |
void | SetSize (int s, Vector &v) |
Resize the vector to size s using the MemoryType of v. More... | |
void | SetData (double *d) |
void | SetDataAndSize (double *d, int s) |
Set the Vector data and size. More... | |
void | NewDataAndSize (double *d, int s) |
Set the Vector data and size, deleting the old data, if owned. More... | |
void | NewMemoryAndSize (const Memory< double > &mem, int s, bool own_mem) |
Reset the Vector to use the given external Memory mem and size s. More... | |
void | MakeRef (Vector &base, int offset, int size) |
Reset the Vector to be a reference to a sub-vector of base. More... | |
void | MakeRef (Vector &base, int offset) |
Reset the Vector to be a reference to a sub-vector of base without changing its current size. More... | |
void | MakeDataOwner () const |
Set the Vector data (host pointer) ownership flag. More... | |
void | Destroy () |
Destroy a vector. More... | |
int | Size () const |
Returns the size of the vector. More... | |
int | Capacity () const |
Return the size of the currently allocated data array. More... | |
double * | GetData () const |
Return a pointer to the beginning of the Vector data. More... | |
operator double * () | |
Conversion to double * . More... | |
operator const double * () const | |
Conversion to const double * . More... | |
Memory< double > & | GetMemory () |
Return a reference to the Memory object used by the Vector. More... | |
const Memory< double > & | GetMemory () const |
Return a reference to the Memory object used by the Vector, const version. More... | |
void | SyncMemory (const Vector &v) |
Update the memory location of the vector to match v. More... | |
void | SyncAliasMemory (const Vector &v) |
Update the alias memory location of the vector to match v. More... | |
bool | OwnsData () const |
Read the Vector data (host pointer) ownership flag. More... | |
void | StealData (double **p) |
Changes the ownership of the data; after the call the Vector is empty. More... | |
double * | StealData () |
Changes the ownership of the data; after the call the Vector is empty. More... | |
double & | Elem (int i) |
Access Vector entries. Index i = 0 .. size-1. More... | |
const double & | Elem (int i) const |
Read only access to Vector entries. Index i = 0 .. size-1. More... | |
double & | operator() (int i) |
Access Vector entries using () for 0-based indexing. More... | |
const double & | operator() (int i) const |
Read only access to Vector entries using () for 0-based indexing. More... | |
double | operator* (const double *) const |
Dot product with a double * array. More... | |
double | operator* (const Vector &v) const |
Return the inner-product. More... | |
Vector & | operator= (const double *v) |
Copy Size() entries from v. More... | |
Vector & | operator= (const Vector &v) |
Copy assignment. More... | |
Vector & | operator= (double value) |
Redefine '=' for vector = constant. More... | |
Vector & | operator*= (double c) |
Vector & | operator/= (double c) |
Vector & | operator-= (double c) |
Vector & | operator-= (const Vector &v) |
Vector & | operator+= (double c) |
Vector & | operator+= (const Vector &v) |
Vector & | Add (const double a, const Vector &Va) |
(*this) += a * Va More... | |
Vector & | Set (const double a, const Vector &x) |
(*this) = a * x More... | |
void | SetVector (const Vector &v, int offset) |
void | Neg () |
(*this) = -(*this) More... | |
void | Swap (Vector &other) |
Swap the contents of two Vectors. More... | |
void | median (const Vector &lo, const Vector &hi) |
v = median(v,lo,hi) entrywise. Implementation assumes lo <= hi. More... | |
void | GetSubVector (const Array< int > &dofs, Vector &elemvect) const |
Extract entries listed in dofs to the output Vector elemvect. More... | |
void | GetSubVector (const Array< int > &dofs, double *elem_data) const |
Extract entries listed in dofs to the output array elem_data. More... | |
void | SetSubVector (const Array< int > &dofs, const double value) |
Set the entries listed in dofs to the given value. More... | |
void | SetSubVector (const Array< int > &dofs, const Vector &elemvect) |
Set the entries listed in dofs to the values given in the elemvect Vector. Negative dof values cause the -dof-1 position in this Vector to receive the -val from elemvect. More... | |
void | SetSubVector (const Array< int > &dofs, double *elem_data) |
Set the entries listed in dofs to the values given the , elem_data array. Negative dof values cause the -dof-1 position in this Vector to receive the -val from elem_data. More... | |
void | AddElementVector (const Array< int > &dofs, const Vector &elemvect) |
Add elements of the elemvect Vector to the entries listed in dofs. Negative dof values cause the -dof-1 position in this Vector to add the -val from elemvect. More... | |
void | AddElementVector (const Array< int > &dofs, double *elem_data) |
Add elements of the elem_data array to the entries listed in dofs. Negative dof values cause the -dof-1 position in this Vector to add the -val from elem_data. More... | |
void | AddElementVector (const Array< int > &dofs, const double a, const Vector &elemvect) |
Add times the elements of the elemvect Vector to the entries listed in dofs. Negative dof values cause the -dof-1 position in this Vector to add the -a*val from elemvect. More... | |
void | SetSubVectorComplement (const Array< int > &dofs, const double val) |
Set all vector entries NOT in the dofs Array to the given val. More... | |
void | Print (std::ostream &out=mfem::out, int width=8) const |
Prints vector to stream out. More... | |
void | Print (adios2stream &out, const std::string &variable_name) const |
void | Print_HYPRE (std::ostream &out) const |
Prints vector to stream out in HYPRE_Vector format. More... | |
void | Randomize (int seed=0) |
Set random values in the vector. More... | |
double | Norml2 () const |
Returns the l2 norm of the vector. More... | |
double | Normlinf () const |
Returns the l_infinity norm of the vector. More... | |
double | Norml1 () const |
Returns the l_1 norm of the vector. More... | |
double | Normlp (double p) const |
Returns the l_p norm of the vector. More... | |
double | Max () const |
Returns the maximal element of the vector. More... | |
double | Min () const |
Returns the minimal element of the vector. More... | |
double | Sum () const |
Return the sum of the vector entries. More... | |
double | DistanceSquaredTo (const double *p) const |
Compute the square of the Euclidean distance to another vector. More... | |
double | DistanceTo (const double *p) const |
Compute the Euclidean distance to another vector. More... | |
int | CheckFinite () const |
Count the number of entries in the Vector for which isfinite is false, i.e. the entry is a NaN or +/-Inf. More... | |
virtual | ~Vector () |
Destroys vector. More... | |
const double * | Read (bool on_dev=true) const |
Shortcut for mfem::Read(vec.GetMemory(), vec.Size(), on_dev). More... | |
const double * | HostRead () const |
Shortcut for mfem::Read(vec.GetMemory(), vec.Size(), false). More... | |
double * | Write (bool on_dev=true) |
Shortcut for mfem::Write(vec.GetMemory(), vec.Size(), on_dev). More... | |
double * | HostWrite () |
Shortcut for mfem::Write(vec.GetMemory(), vec.Size(), false). More... | |
double * | ReadWrite (bool on_dev=true) |
Shortcut for mfem::ReadWrite(vec.GetMemory(), vec.Size(), on_dev). More... | |
double * | HostReadWrite () |
Shortcut for mfem::ReadWrite(vec.GetMemory(), vec.Size(), false). More... | |
MFEM_DEPRECATED | Vector (N_Vector nv) |
(DEPRECATED) Construct a wrapper Vector from SUNDIALS N_Vector. More... | |
virtual MFEM_DEPRECATED N_Vector | ToNVector () |
(DEPRECATED) Return a new wrapper SUNDIALS N_Vector of type SUNDIALS_NVEC_SERIAL. More... | |
virtual MFEM_DEPRECATED void | ToNVector (N_Vector &nv, long global_length=0) |
Update an existing wrapper SUNDIALS N_Vector to point to this Vector. More... | |
Protected Attributes | |
Memory< double > | data |
int | size |
Friends | |
void | add (const Vector &v1, const Vector &v2, Vector &v) |
Set v = v1 + v2. More... | |
void | add (const Vector &v1, double alpha, const Vector &v2, Vector &v) |
Set v = v1 + alpha * v2. More... | |
void | add (const double a, const Vector &x, const Vector &y, Vector &z) |
z = a * (x + y) More... | |
void | add (const double a, const Vector &x, const double b, const Vector &y, Vector &z) |
z = a * x + b * y More... | |
void | subtract (const Vector &v1, const Vector &v2, Vector &v) |
Set v = v1 - v2. More... | |
void | subtract (const double a, const Vector &x, const Vector &y, Vector &z) |
z = a * (x - y) More... | |
Vector data type.
Definition at line 51 of file vector.hpp.
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Default constructor for Vector. Sets size = 0 and data = NULL.
Definition at line 61 of file vector.hpp.
mfem::Vector::Vector | ( | const Vector & | v | ) |
Copy constructor. Allocates a new data array and copies the data.
Definition at line 35 of file vector.cpp.
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Creates vector of size s.
Definition at line 445 of file vector.hpp.
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Creates a vector referencing an array of doubles, owned by someone else.
The pointer _data can be NULL. The data array can be replaced later with SetData().
Definition at line 73 of file vector.hpp.
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Create a Vector of size size_ using MemoryType mt.
Definition at line 77 of file vector.hpp.
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Destroys vector.
Definition at line 567 of file vector.hpp.
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(DEPRECATED) Construct a wrapper Vector from SUNDIALS N_Vector.
Definition at line 1176 of file vector.cpp.
(*this) += a * Va
Definition at line 213 of file vector.cpp.
Add elements of the elemvect Vector to the entries listed in dofs. Negative dof values cause the -dof-1 position in this Vector to add the -val from elemvect.
Definition at line 587 of file vector.cpp.
void mfem::Vector::AddElementVector | ( | const Array< int > & | dofs, |
double * | elem_data | ||
) |
Add elements of the elem_data array to the entries listed in dofs. Negative dof values cause the -dof-1 position in this Vector to add the -val from elem_data.
Definition at line 612 of file vector.cpp.
void mfem::Vector::AddElementVector | ( | const Array< int > & | dofs, |
const double | a, | ||
const Vector & | elemvect | ||
) |
Add times the elements of the elemvect Vector to the entries listed in dofs. Negative dof values cause the -dof-1 position in this Vector to add the -a*val from elemvect.
Definition at line 630 of file vector.cpp.
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Return the size of the currently allocated data array.
It is always true that Capacity() >= Size().
Definition at line 164 of file vector.hpp.
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Count the number of entries in the Vector for which isfinite is false, i.e. the entry is a NaN or +/-Inf.
Definition at line 366 of file vector.hpp.
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Destroy a vector.
Definition at line 530 of file vector.hpp.
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Compute the square of the Euclidean distance to another vector.
Definition at line 589 of file vector.hpp.
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Compute the Euclidean distance to another vector.
Definition at line 594 of file vector.hpp.
double & mfem::Vector::Elem | ( | int | i | ) |
Access Vector entries. Index i = 0 .. size-1.
Definition at line 97 of file vector.cpp.
const double & mfem::Vector::Elem | ( | int | i | ) | const |
Read only access to Vector entries. Index i = 0 .. size-1.
Definition at line 102 of file vector.cpp.
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Return a pointer to the beginning of the Vector data.
Definition at line 169 of file vector.hpp.
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Return a reference to the Memory object used by the Vector.
Definition at line 183 of file vector.hpp.
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Return a reference to the Memory object used by the Vector, const version.
Definition at line 187 of file vector.hpp.
Extract entries listed in dofs to the output Vector elemvect.
Negative dof values cause the -dof-1 position in elemvect to receive the -val in from this Vector.
Definition at line 495 of file vector.cpp.
void mfem::Vector::GetSubVector | ( | const Array< int > & | dofs, |
double * | elem_data | ||
) | const |
Extract entries listed in dofs to the output array elem_data.
Negative dof values cause the -dof-1 position in elem_data to receive the -val in from this Vector.
Definition at line 510 of file vector.cpp.
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Shortcut for mfem::Read(vec.GetMemory(), vec.Size(), false).
Definition at line 376 of file vector.hpp.
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Shortcut for mfem::ReadWrite(vec.GetMemory(), vec.Size(), false).
Definition at line 392 of file vector.hpp.
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Shortcut for mfem::Write(vec.GetMemory(), vec.Size(), false).
Definition at line 384 of file vector.hpp.
void mfem::Vector::Load | ( | std::istream ** | in, |
int | np, | ||
int * | dim | ||
) |
Reads a vector from multiple files.
Definition at line 53 of file vector.cpp.
void mfem::Vector::Load | ( | std::istream & | in, |
int | Size | ||
) |
Load a vector from an input stream.
Definition at line 81 of file vector.cpp.
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Load a vector from an input stream, reading the size from the stream.
Definition at line 101 of file vector.hpp.
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Set the Vector data (host pointer) ownership flag.
Definition at line 154 of file vector.hpp.
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Reset the Vector to be a reference to a sub-vector of base.
Definition at line 517 of file vector.hpp.
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Reset the Vector to be a reference to a sub-vector of base without changing its current size.
Definition at line 524 of file vector.hpp.
double mfem::Vector::Max | ( | ) | const |
Returns the maximal element of the vector.
Definition at line 832 of file vector.cpp.
v = median(v,lo,hi) entrywise. Implementation assumes lo <= hi.
Definition at line 471 of file vector.cpp.
double mfem::Vector::Min | ( | ) | const |
Returns the minimal element of the vector.
Definition at line 1105 of file vector.cpp.
void mfem::Vector::Neg | ( | ) |
(*this) = -(*this)
Definition at line 253 of file vector.cpp.
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Set the Vector data and size, deleting the old data, if owned.
The Vector does not assume ownership of the new data. The new size is also used as the new Capacity().
Definition at line 134 of file vector.hpp.
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Reset the Vector to use the given external Memory mem and size s.
If own_mem is false, the Vector will not own any of the pointers of mem.
Definition at line 508 of file vector.hpp.
double mfem::Vector::Norml1 | ( | ) | const |
Returns the l_1 norm of the vector.
Definition at line 772 of file vector.cpp.
double mfem::Vector::Norml2 | ( | ) | const |
Returns the l2 norm of the vector.
Definition at line 744 of file vector.cpp.
double mfem::Vector::Normlinf | ( | ) | const |
Returns the l_infinity norm of the vector.
Definition at line 762 of file vector.cpp.
double mfem::Vector::Normlp | ( | double | p | ) | const |
Returns the l_p norm of the vector.
Definition at line 782 of file vector.cpp.
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Conversion to const double *
.
Definition at line 180 of file vector.hpp.
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Conversion to double *
.
Definition at line 175 of file vector.hpp.
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Access Vector entries using () for 0-based indexing.
Definition at line 539 of file vector.hpp.
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Read only access to Vector entries using () for 0-based indexing.
Definition at line 547 of file vector.hpp.
double mfem::Vector::operator* | ( | const double * | v | ) | const |
Dot product with a double *
array.
Definition at line 107 of file vector.cpp.
double mfem::Vector::operator* | ( | const Vector & | v | ) | const |
Return the inner-product.
Definition at line 1040 of file vector.cpp.
Vector & mfem::Vector::operator*= | ( | double | c | ) |
Definition at line 152 of file vector.cpp.
Vector & mfem::Vector::operator+= | ( | double | c | ) |
Definition at line 192 of file vector.cpp.
Definition at line 201 of file vector.cpp.
Vector & mfem::Vector::operator-= | ( | double | c | ) |
Definition at line 171 of file vector.cpp.
Definition at line 180 of file vector.cpp.
Vector & mfem::Vector::operator/= | ( | double | c | ) |
Definition at line 161 of file vector.cpp.
Vector & mfem::Vector::operator= | ( | const double * | v | ) |
Copy Size() entries from v.
Definition at line 120 of file vector.cpp.
Copy assignment.
Definition at line 126 of file vector.cpp.
Vector & mfem::Vector::operator= | ( | double | value | ) |
Redefine '=' for vector = constant.
Definition at line 143 of file vector.cpp.
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Read the Vector data (host pointer) ownership flag.
Definition at line 197 of file vector.hpp.
void mfem::Vector::Print | ( | std::ostream & | out = mfem::out , |
int | width = 8 |
||
) | const |
Prints vector to stream out.
Definition at line 672 of file vector.cpp.
void mfem::Vector::Print | ( | adios2stream & | out, |
const std::string & | variable_name | ||
) | const |
Prints vector to stream out.
out | adios2stream output |
variable_name | variable name associated with current Vector |
Definition at line 697 of file vector.cpp.
void mfem::Vector::Print_HYPRE | ( | std::ostream & | out | ) | const |
Prints vector to stream out in HYPRE_Vector format.
Definition at line 706 of file vector.cpp.
void mfem::Vector::Randomize | ( | int | seed = 0 | ) |
Set random values in the vector.
Definition at line 725 of file vector.cpp.
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Shortcut for mfem::Read(vec.GetMemory(), vec.Size(), on_dev).
Definition at line 372 of file vector.hpp.
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Shortcut for mfem::ReadWrite(vec.GetMemory(), vec.Size(), on_dev).
Definition at line 388 of file vector.hpp.
(*this) = a * x
Definition at line 228 of file vector.cpp.
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Set the Vector data.
Definition at line 121 of file vector.hpp.
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Set the Vector data and size.
The Vector does not assume ownership of the new data. The new size is also used as the new Capacity().
Definition at line 128 of file vector.hpp.
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Resize the vector to size s.
If the new size is less than or equal to Capacity() then the internal data array remains the same. Otherwise, the old array is deleted, if owned, and a new array of size s is allocated without copying the previous content of the Vector.
Definition at line 459 of file vector.hpp.
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Resize the vector to size s using MemoryType mt.
Definition at line 479 of file vector.hpp.
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Resize the vector to size s using the MemoryType of v.
Definition at line 117 of file vector.hpp.
void mfem::Vector::SetSubVector | ( | const Array< int > & | dofs, |
const double | value | ||
) |
Set the entries listed in dofs to the given value.
Negative dof values cause the -dof-1 position in this Vector to receive the -value.
Definition at line 521 of file vector.cpp.
Set the entries listed in dofs to the values given in the elemvect Vector. Negative dof values cause the -dof-1 position in this Vector to receive the -val from elemvect.
Definition at line 542 of file vector.cpp.
void mfem::Vector::SetSubVector | ( | const Array< int > & | dofs, |
double * | elem_data | ||
) |
Set the entries listed in dofs to the values given the , elem_data array. Negative dof values cause the -dof-1 position in this Vector to receive the -val from elem_data.
Definition at line 568 of file vector.cpp.
void mfem::Vector::SetSubVectorComplement | ( | const Array< int > & | dofs, |
const double | val | ||
) |
Set all vector entries NOT in the dofs Array to the given val.
Definition at line 656 of file vector.cpp.
void mfem::Vector::SetVector | ( | const Vector & | v, |
int | offset | ||
) |
Definition at line 240 of file vector.cpp.
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Returns the size of the vector.
Definition at line 160 of file vector.hpp.
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Changes the ownership of the data; after the call the Vector is empty.
Definition at line 200 of file vector.hpp.
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Changes the ownership of the data; after the call the Vector is empty.
Definition at line 204 of file vector.hpp.
double mfem::Vector::Sum | ( | ) | const |
Return the sum of the vector entries.
Definition at line 849 of file vector.cpp.
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Swap the contents of two Vectors.
Definition at line 555 of file vector.hpp.
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Update the alias memory location of the vector to match v.
Definition at line 193 of file vector.hpp.
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Update the memory location of the vector to match v.
Definition at line 190 of file vector.hpp.
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(DEPRECATED) Return a new wrapper SUNDIALS N_Vector of type SUNDIALS_NVEC_SERIAL.
Reimplemented in mfem::HypreParVector.
Definition at line 401 of file vector.hpp.
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Update an existing wrapper SUNDIALS N_Vector to point to this Vector.
[in] | nv | N_Vector to assign this vector's data to |
[in] | global_length | An optional parameter that designates the global length. If nv is a parallel vector and global_length == 0 then this method will perform a global reduction and calculate the global length |
Definition at line 1195 of file vector.cpp.
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Enable execution of Vector operations using the mfem::Device.
The default is to use Backend::CPU (serial execution on each MPI rank), regardless of the mfem::Device configuration.
When appropriate, MFEM functions and class methods will enable the use of the mfem::Device for their Vector parameters.
Some derived classes, e.g. GridFunction, enable the use of the mfem::Device by default.
Definition at line 89 of file vector.hpp.
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Return the device flag of the Memory object used by the Vector.
Definition at line 92 of file vector.hpp.
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Shortcut for mfem::Write(vec.GetMemory(), vec.Size(), on_dev).
Definition at line 380 of file vector.hpp.
Set v = v1 + v2.
Definition at line 261 of file vector.cpp.
Set v = v1 + alpha * v2.
Definition at line 283 of file vector.cpp.
z = a * (x + y)
Definition at line 319 of file vector.cpp.
z = a * x + b * y
Definition at line 356 of file vector.cpp.
Set v = v1 - v2.
Definition at line 408 of file vector.cpp.
z = a * (x - y)
Definition at line 434 of file vector.cpp.
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Definition at line 55 of file vector.hpp.
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Definition at line 56 of file vector.hpp.