A class for non-conforming AMR on higher-order hexahedral, quadrilateral or triangular meshes. More...

#include <ncmesh.hpp>

Inheritance diagram for mfem::NCMesh:

Collaboration diagram for mfem::NCMesh:

Classes
struct	Edge

struct	Element

struct	ElemRefType

struct	Face

struct	GeomInfo

struct	Master

struct	MeshId
	Identifies a vertex/edge/face in both Mesh and NCMesh. More...

struct	NCList
	Lists all edges/faces in the nonconforming mesh. More...

struct	Node

struct	Point

struct	PointMatrix

struct	RefCount

struct	Slave

struct	Vertex

Public Member Functions
	NCMesh (const Mesh mesh, std::istream vertex_parents=NULL)

	NCMesh (const NCMesh &other)
	Deep copy of 'other'. More...

virtual	~NCMesh ()

int	Dimension () const

int	SpaceDimension () const

virtual void	Refine (const Array< Refinement > &refinements)

virtual void	LimitNCLevel (int max_nc_level)

const Table &	GetDerefinementTable ()

virtual void	CheckDerefinementNCLevel (const Table &deref_table, Array< int > &level_ok, int max_nc_level)

virtual void	Derefine (const Array< int > &derefs)

const NCList &	GetFaceList ()
	Return the current list of conforming and nonconforming faces. More...

const NCList &	GetEdgeList ()
	Return the current list of conforming and nonconforming edges. More...

void	MarkCoarseLevel ()

const CoarseFineTransformations &	GetRefinementTransforms ()

const CoarseFineTransformations &	GetDerefinementTransforms ()

void	ClearTransforms ()
	Free all internal data created by the above three functions. More...

int	GetEdgeMaster (int v1, int v2) const

virtual void	GetBoundaryClosure (const Array< int > &bdr_attr_is_ess, Array< int > &bdr_vertices, Array< int > &bdr_edges)

int	GetElementGeometry () const
	Return the type of elements in the mesh. More...

int	GetElementDepth (int i) const
	Return the distance of leaf 'i' from the root. More...

void	PrintVertexParents (std::ostream &out) const
	I/O: Print the "vertex_parents" section of the mesh file (ver. >= 1.1). More...

void	PrintCoarseElements (std::ostream &out) const
	I/O: Print the "coarse_elements" section of the mesh file (ver. >= 1.1). More...

void	LoadVertexParents (std::istream &input)

void	LoadCoarseElements (std::istream &input)
	I/O: Load the element refinement hierarchy from a mesh file. More...

void	SetVertexPositions (const Array< mfem::Vertex > &vertices)
	I/O: Set positions of all vertices (used by mesh loader). More...

long	MemoryUsage () const
	Return total number of bytes allocated. More...

void	PrintMemoryDetail () const

void	DebugNeighbors (Array< char > &elem_set)

void	DebugLeafOrder () const
	Print the space-filling curve formed by the sequence of leaf elements. More...

Static Public Attributes
static GeomInfo	GI [Geometry::NumGeom]

Protected Types
typedef std::map< std::string, int >	RefPathMap

Protected Member Functions
void	GetMeshComponents (Array< mfem::Vertex > &vertices, Array< mfem::Element * > &elements, Array< mfem::Element * > &boundary) const
	Return the basic Mesh arrays for the current finest level. More...

virtual void	OnMeshUpdated (Mesh *mesh)

Element *	CopyHierarchy (Element *elem)

void	DeleteHierarchy (Element *elem)

virtual void	Update ()

virtual void	UpdateVertices ()
	update Vertex::index and vertex_nodeId More...

void	CollectLeafElements (Element *elem, int state)

void	UpdateLeafElements ()

virtual void	AssignLeafIndices ()

virtual bool	IsGhost (const Element *elem) const

virtual int	GetNumGhosts () const

void	RefineElement (Element *elem, char ref_type)

void	DerefineElement (Element *elem)

Element *	NewHexahedron (Node n0, Node n1, Node n2, Node n3, Node n4, Node n5, Node n6, Node n7, int attr, int fattr0, int fattr1, int fattr2, int fattr3, int fattr4, int fattr5)

Element *	NewQuadrilateral (Node n0, Node n1, Node n2, Node n3, int attr, int eattr0, int eattr1, int eattr2, int eattr3)

Element *	NewTriangle (Node n0, Node n1, Node *n2, int attr, int eattr0, int eattr1, int eattr2)

Vertex *	NewVertex (Node v1, Node v2)

mfem::Element *	NewMeshElement (int geom) const

Node *	GetMidEdgeVertex (Node v1, Node v2)

Node *	GetMidEdgeVertexSimple (Node v1, Node v2)

Node *	GetMidFaceVertex (Node e1, Node e2, Node e3, Node e4)

int	FaceSplitType (Node v1, Node v2, Node v3, Node v4, Node *mid[4]=NULL) const

void	ForceRefinement (Node v1, Node v2, Node v3, Node v4)

void	CheckAnisoFace (Node v1, Node v2, Node v3, Node v4, Node mid12, Node mid34, int level=0)

void	CheckIsoFace (Node v1, Node v2, Node v3, Node v4, Node e1, Node e2, Node e3, Node e4, Node *midf)

void	RefElementNodes (Element *elem)

void	UnrefElementNodes (Element *elem)

Face *	GetFace (Element *elem, int face_no)

void	RegisterFaces (Element elem, int fattr=NULL)

Node *	PeekAltParents (Node v1, Node v2)

bool	NodeSetX1 (Node node, Node *n)

bool	NodeSetX2 (Node node, Node *n)

bool	NodeSetY1 (Node node, Node *n)

bool	NodeSetY2 (Node node, Node *n)

bool	NodeSetZ1 (Node node, Node *n)

bool	NodeSetZ2 (Node node, Node *n)

void	CollectDerefinements (Element *elem, Array< Connection > &list)

int	ReorderFacePointMat (Node v0, Node v1, Node v2, Node v3, Element *elem, DenseMatrix &mat) const

void	TraverseFace (Node v0, Node v1, Node v2, Node v3, const PointMatrix &pm, int level)

void	TraverseEdge (Node v0, Node v1, double t0, double t1, int flags, int level)

virtual void	BuildFaceList ()

virtual void	BuildEdgeList ()

virtual void	ElementSharesEdge (Element elem, Edge edge)

virtual void	ElementSharesFace (Element elem, Face face)

void	FindSetNeighbors (const Array< char > &elem_set, Array< Element * > neighbors, Array< char > neighbor_set=NULL)

void	FindNeighbors (const Element elem, Array< Element > &neighbors, const Array< Element * > *search_set=NULL)

void	NeighborExpand (const Array< Element * > &elements, Array< Element * > &expanded, const Array< Element * > *search_set=NULL)

void	CollectEdgeVertices (Node v0, Node v1, Array< int > &indices)

void	CollectFaceVertices (Node v0, Node v1, Node v2, Node v3, Array< int > &indices)

void	BuildElementToVertexTable ()

void	UpdateElementToVertexTable ()

void	GetPointMatrix (int geom, const char *ref_path, DenseMatrix &matrix)

void	TraverseRefinements (Element *elem, int coarse_index, std::string &ref_path, RefPathMap &map)

void	InitDerefTransforms ()

void	SetDerefMatrixCodes (Element parent, Array< Element > &coarse)

Node *	GetEdgeMaster (Node *node) const

int	EdgeSplitLevel (Node v1, Node v2) const

void	FaceSplitLevel (Node v1, Node v2, Node v3, Node v4, int &h_level, int &v_level) const

void	CountSplits (Element *elem, int splits[3]) const

void	GetLimitRefinements (Array< Refinement > &refinements, int max_level)

int	CountElements (Element *elem) const

int	PrintElements (std::ostream &out, Element *elem, int &coarse_id) const

void	CountObjects (int &nelem, int &nvert, int &nedges) const

Static Protected Member Functions
static int	find_node (Element elem, Node node)

static int	find_node (Element *elem, int node_id)

static int	find_element_edge (Element *elem, int v0, int v1)

static int	find_hex_face (int a, int b, int c)

static const PointMatrix &	GetGeomIdentity (int geom)

static void	find_face_nodes (const Face face, Node node[4])

Protected Attributes
int	Dim

int	spaceDim
	dimensions of the elements and the vertex coordinates More...

bool	Iso
	true if the mesh only contains isotropic refinements More...

Array< Element * >	root_elements

HashTable< Node >	nodes

HashTable< Face >	faces

Array< Element * >	leaf_elements

Array< int >	vertex_nodeId

NCList	face_list
	lazy-initialized list of faces, see GetFaceList More...

NCList	edge_list
	lazy-initialized list of edges, see GetEdgeList More...

Array< Face * >	boundary_faces
	subset of all faces, set by BuildFaceList More...

Array< Node * >	boundary_edges
	subset of all edges, set by BuildEdgeList More...

Table	element_vertex
	leaf-element to vertex table, see FindSetNeighbors More...

int	num_vertices
	width of the table More...

Array< ElemRefType >	ref_stack
	stack of scheduled refinements (temporary) More...

Table	derefinements
	possible derefinements, see GetDerefinementTable More...

CoarseFineTransformations	transforms
	storage for data returned by Get[De]RefinementTransforms() More...

Array< Element * >	coarse_elements
	state of leaf_elements before Refine(), set by MarkCoarseLevel() More...

Static Protected Attributes
static PointMatrix	pm_tri_identity

static PointMatrix	pm_quad_identity

static PointMatrix	pm_hex_identity

Friends
class	Mesh

class	ParNCMesh

Detailed Description

A class for non-conforming AMR on higher-order hexahedral, quadrilateral or triangular meshes.

The class is used as follows:

NCMesh is constructed from elements of an existing Mesh. The elements are copied and become roots of the refinement hierarchy.
Some elements are refined with the Refine() method. Both isotropic and anisotropic refinements of quads/hexes are supported.
A new Mesh is created from NCMesh containing the leaf elements. This new mesh may have non-conforming (hanging) edges and faces.
FiniteElementSpace asks NCMesh for a list of conforming, master and slave edges/faces and creates the conforming interpolation matrix P.
A continuous/conforming solution is obtained by solving P'*A*P x = P'*b.
Repeat from step 2.

Definition at line 79 of file ncmesh.hpp.

Member Typedef Documentation

typedef std::map<std::string, int> mfem::NCMesh::RefPathMap

protected

Definition at line 662 of file ncmesh.hpp.

Constructor & Destructor Documentation

mfem::NCMesh::NCMesh	(	const Mesh *	mesh,
		std::istream *	vertex_parents = `NULL`
	)

Initialize with elements from 'mesh'. If an already nonconforming mesh is being loaded, 'vertex_parents' must point to a stream at the appropriate section of the mesh file which contains the vertex hierarchy.

Definition at line 68 of file ncmesh.cpp.

mfem::NCMesh::NCMesh ( const NCMesh & other )

Deep copy of 'other'.

Definition at line 240 of file ncmesh.cpp.

mfem::NCMesh::~NCMesh ( )

virtual

Definition at line 254 of file ncmesh.cpp.

Member Function Documentation

void mfem::NCMesh::AssignLeafIndices ( )

protectedvirtual

Reimplemented in mfem::ParNCMesh.

Definition at line 1574 of file ncmesh.cpp.

void mfem::NCMesh::BuildEdgeList ( )

protectedvirtual

Reimplemented in mfem::ParNCMesh.

Definition at line 1987 of file ncmesh.cpp.

void mfem::NCMesh::BuildElementToVertexTable ( )

protected

Definition at line 2119 of file ncmesh.cpp.

void mfem::NCMesh::BuildFaceList ( )

protectedvirtual

Reimplemented in mfem::ParNCMesh.

Definition at line 1876 of file ncmesh.cpp.

void mfem::NCMesh::CheckAnisoFace	(	Node *	v1,
		Node *	v2,
		Node *	v3,
		Node *	v4,
		Node *	mid12,
		Node *	mid34,
		int	level = `0`
	)

protected

Definition at line 673 of file ncmesh.cpp.

void mfem::NCMesh::CheckDerefinementNCLevel	(	const Table &	deref_table,
		Array< int > &	level_ok,
		int	max_nc_level
	)

virtual

Check derefinements returned by GetDerefinementTable and mark those that can be done safely so that the maximum NC level condition is not violated. On return, level_ok.Size() == deref_table.Size() and contains 0/1s.

Reimplemented in mfem::ParNCMesh.

Definition at line 1371 of file ncmesh.cpp.

void mfem::NCMesh::CheckIsoFace	(	Node *	v1,
		Node *	v2,
		Node *	v3,
		Node *	v4,
		Node *	e1,
		Node *	e2,
		Node *	e3,
		Node *	e4,
		Node *	midf
	)

protected

Definition at line 739 of file ncmesh.cpp.

void mfem::NCMesh::ClearTransforms ( )

Free all internal data created by the above three functions.

Definition at line 2855 of file ncmesh.cpp.

void mfem::NCMesh::CollectDerefinements	(	Element *	elem,
		Array< Connection > &	list
	)

protected

Definition at line 1320 of file ncmesh.cpp.

void mfem::NCMesh::CollectEdgeVertices	(	Node *	v0,
		Node *	v1,
		Array< int > &	indices
	)

protected

Definition at line 2083 of file ncmesh.cpp.

void mfem::NCMesh::CollectFaceVertices	(	Node *	v0,
		Node *	v1,
		Node *	v2,
		Node *	v3,
		Array< int > &	indices
	)

protected

Definition at line 2095 of file ncmesh.cpp.

void mfem::NCMesh::CollectLeafElements	(	Element *	elem,
		int	state
	)

protected

Definition at line 1520 of file ncmesh.cpp.

NCMesh::Element * mfem::NCMesh::CopyHierarchy ( Element * elem )

protected

Definition at line 198 of file ncmesh.cpp.

int mfem::NCMesh::CountElements ( Element * elem ) const

protected

Definition at line 3294 of file ncmesh.cpp.

void mfem::NCMesh::CountObjects	(	int &	nelem,
		int &	nvert,
		int &	nedges
	)		const

protected

Definition at line 3322 of file ncmesh.cpp.

void mfem::NCMesh::CountSplits	(	Element *	elem,
		int	splits[3]
	)		const

protected

Definition at line 3028 of file ncmesh.cpp.

void mfem::NCMesh::DebugLeafOrder ( ) const

Print the space-filling curve formed by the sequence of leaf elements.

Definition at line 3385 of file ncmesh.cpp.

void mfem::NCMesh::DebugNeighbors ( Array< char > & elem_set )

Definition at line 2385 of file ncmesh.cpp.

void mfem::NCMesh::DeleteHierarchy ( Element * elem )

protected

Definition at line 224 of file ncmesh.cpp.

void mfem::NCMesh::Derefine ( const Array< int > & derefs )

virtual

Perform a subset of the possible derefinements (see GetDerefinementTable). Note that if anisotropic refinements are present in the mesh, some of the derefinements may have to be skipped to preserve mesh consistency.

Reimplemented in mfem::ParNCMesh.

Definition at line 1400 of file ncmesh.cpp.

void mfem::NCMesh::DerefineElement ( Element * elem )

protected

Definition at line 1211 of file ncmesh.cpp.

int mfem::NCMesh::Dimension ( ) const

inline

Definition at line 96 of file ncmesh.hpp.

int mfem::NCMesh::EdgeSplitLevel	(	Node *	v1,
		Node *	v2
	)		const

protected

Definition at line 2988 of file ncmesh.cpp.

virtual void mfem::NCMesh::ElementSharesEdge	(	Element *	elem,
		Edge *	edge
	)

inlineprotectedvirtual

Reimplemented in mfem::ParNCMesh.

Definition at line 541 of file ncmesh.hpp.

virtual void mfem::NCMesh::ElementSharesFace	(	Element *	elem,
		Face *	face
	)

inlineprotectedvirtual

Reimplemented in mfem::ParNCMesh.

Definition at line 542 of file ncmesh.hpp.

void mfem::NCMesh::FaceSplitLevel	(	Node *	v1,
		Node *	v2,
		Node *	v3,
		Node *	v4,
		int &	h_level,
		int &	v_level
	)		const

protected

Definition at line 2995 of file ncmesh.cpp.

int mfem::NCMesh::FaceSplitType	(	Node *	v1,
		Node *	v2,
		Node *	v3,
		Node *	v4,
		Node *	mid[4] = `NULL`
	)		const

protected

Definition at line 1717 of file ncmesh.cpp.

int mfem::NCMesh::find_element_edge	(	Element *	elem,
		int	v0,
		int	v1
	)

staticprotected

Definition at line 1763 of file ncmesh.cpp.

void mfem::NCMesh::find_face_nodes	(	const Face *	face,
		Node *	node[4]
	)

staticprotected

Definition at line 2912 of file ncmesh.cpp.

int mfem::NCMesh::find_hex_face	(	int	a,
		int	b,
		int	c
	)

staticprotected

Definition at line 1779 of file ncmesh.cpp.

int mfem::NCMesh::find_node	(	Element *	elem,
		Node *	node
	)

staticprotected

Definition at line 1745 of file ncmesh.cpp.

int mfem::NCMesh::find_node	(	Element *	elem,
		int	node_id
	)

staticprotected

Definition at line 1754 of file ncmesh.cpp.

void mfem::NCMesh::FindNeighbors	(	const Element *	elem,
		Array< Element * > &	neighbors,
		const Array< Element * > *	search_set = `NULL`
	)

protected

Return all vertex-, edge- and face-neighbors of a single element. You can limit the number of elements being checked using 'search_set'. The complexity of the function is linear in the size of the search set.

Definition at line 2280 of file ncmesh.cpp.

void mfem::NCMesh::FindSetNeighbors	(	const Array< char > &	elem_set,
		Array< Element * > *	neighbors,
		Array< char > *	neighbor_set = `NULL`
	)

protected

Return all vertex-, edge- and face-neighbors of a set of elements. The neighbors are returned as a list (neighbors != NULL), as a set (neighbor_set != NULL), or both. The sizes of the set arrays must match that of leaf_elements. The function is intended to be used for large sets of elements and its complexity is linear in the number of leaf elements in the mesh.

Definition at line 2196 of file ncmesh.cpp.

void mfem::NCMesh::ForceRefinement	(	Node *	v1,
		Node *	v2,
		Node *	v3,
		Node *	v4
	)

protected

Definition at line 639 of file ncmesh.cpp.

void mfem::NCMesh::GetBoundaryClosure	(	const Array< int > &	bdr_attr_is_ess,
		Array< int > &	bdr_vertices,
		Array< int > &	bdr_edges
	)

virtual

Get a list of vertices (2D/3D) and edges (3D) that coincide with boundary elements with the specified attributes (marked in 'bdr_attr_is_ess'). In 3D this function also reveals "hidden" boundary edges. In parallel it helps identifying boundary vertices/edges affected by non-local boundary elements.

Reimplemented in mfem::ParNCMesh.

Definition at line 2932 of file ncmesh.cpp.

const Table & mfem::NCMesh::GetDerefinementTable ( )

Return a list of derefinement opportunities. Each row of the table contains Mesh indices of existing elements that can be derefined to form a single new coarse element. Row numbers are then passed to Derefine. This function works both in serial and parallel.

Definition at line 1356 of file ncmesh.cpp.

const CoarseFineTransformations & mfem::NCMesh::GetDerefinementTransforms ( )

After derefinement, calculate the relations of previous fine elements (some of which may no longer exist) to the current leaf elements. Unlike for refinement, Derefine() may only be called once before this function so there is no MarkFineLevel().

Definition at line 2812 of file ncmesh.cpp.

const NCList& mfem::NCMesh::GetEdgeList ( )

inline

Return the current list of conforming and nonconforming edges.

Definition at line 188 of file ncmesh.hpp.

int mfem::NCMesh::GetEdgeMaster	(	int	v1,
		int	v2
	)		const

Given an edge (by its vertex indices v1 and v2) return the first (geometric) parent edge that exists in the Mesh or -1 if there is no such parent.

Definition at line 2891 of file ncmesh.cpp.

NCMesh::Node * mfem::NCMesh::GetEdgeMaster ( Node * node ) const

protected

Definition at line 2865 of file ncmesh.cpp.

int mfem::NCMesh::GetElementDepth ( int i ) const

Return the distance of leaf 'i' from the root.

Definition at line 2900 of file ncmesh.cpp.

int mfem::NCMesh::GetElementGeometry ( ) const

inline

Return the type of elements in the mesh.

Definition at line 233 of file ncmesh.hpp.

NCMesh::Face * mfem::NCMesh::GetFace	(	Element *	elem,
		int	face_no
	)

protected

Definition at line 391 of file ncmesh.cpp.

const NCList& mfem::NCMesh::GetFaceList ( )

inline

Return the current list of conforming and nonconforming faces.

Definition at line 181 of file ncmesh.hpp.

const NCMesh::PointMatrix & mfem::NCMesh::GetGeomIdentity ( int geom )

staticprotected

Definition at line 2423 of file ncmesh.cpp.

void mfem::NCMesh::GetLimitRefinements	(	Array< Refinement > &	refinements,
		int	max_level
	)

protected

Definition at line 3075 of file ncmesh.cpp.

void mfem::NCMesh::GetMeshComponents	(	Array< mfem::Vertex > &	vertices,
		Array< mfem::Element * > &	elements,
		Array< mfem::Element * > &	boundary
	)		const

protected

Return the basic Mesh arrays for the current finest level.

Definition at line 1595 of file ncmesh.cpp.

NCMesh::Node * mfem::NCMesh::GetMidEdgeVertex	(	Node *	v1,
		Node *	v2
	)

protected

Definition at line 584 of file ncmesh.cpp.

NCMesh::Node * mfem::NCMesh::GetMidEdgeVertexSimple	(	Node *	v1,
		Node *	v2
	)

protected

Definition at line 593 of file ncmesh.cpp.

NCMesh::Node * mfem::NCMesh::GetMidFaceVertex	(	Node *	e1,
		Node *	e2,
		Node *	e3,
		Node *	e4
	)

protected

Definition at line 602 of file ncmesh.cpp.

virtual int mfem::NCMesh::GetNumGhosts ( ) const

inlineprotectedvirtual

Reimplemented in mfem::ParNCMesh.

Definition at line 451 of file ncmesh.hpp.

void mfem::NCMesh::GetPointMatrix	(	int	geom,
		const char *	ref_path,
		DenseMatrix &	matrix
	)

protected

Definition at line 2435 of file ncmesh.cpp.

const CoarseFineTransformations & mfem::NCMesh::GetRefinementTransforms ( )

After refinement, calculate the relation of each fine element to its parent coarse element. Note that Refine() or LimitNCLevel() can be called multiple times between MarkCoarseLevel() and this function.

Definition at line 2775 of file ncmesh.cpp.

void mfem::NCMesh::InitDerefTransforms ( )

protected

Definition at line 1436 of file ncmesh.cpp.

virtual bool mfem::NCMesh::IsGhost ( const Element * elem ) const

inlineprotectedvirtual

Reimplemented in mfem::ParNCMesh.

Definition at line 450 of file ncmesh.hpp.

void mfem::NCMesh::LimitNCLevel ( int max_nc_level )

virtual

Check the mesh and potentially refine some elements so that the maximum difference of refinement levels between adjacent elements is not greater than 'max_nc_level'.

Reimplemented in mfem::ParNCMesh.

Definition at line 3105 of file ncmesh.cpp.

void mfem::NCMesh::LoadCoarseElements ( std::istream & input )

I/O: Load the element refinement hierarchy from a mesh file.

Definition at line 3229 of file ncmesh.cpp.

void mfem::NCMesh::LoadVertexParents ( std::istream & input )

I/O: Load the vertex parent hierarchy from a mesh file. NOTE: called indirectly through the constructor.

Definition at line 3148 of file ncmesh.cpp.

void mfem::NCMesh::MarkCoarseLevel ( )

Remember the current layer of leaf elements before the mesh is refined. Needed by GetRefinementTransforms(), must be called before Refine().

Definition at line 2732 of file ncmesh.cpp.

long mfem::NCMesh::MemoryUsage ( ) const

Return total number of bytes allocated.

Definition at line 3336 of file ncmesh.cpp.

void mfem::NCMesh::NeighborExpand	(	const Array< Element * > &	elements,
		Array< Element * > &	expanded,
		const Array< Element * > *	search_set = `NULL`
	)

protected

Expand a set of elements by all vertex-, edge- and face-neighbors. The output array 'expanded' will contain all items from 'elements' (provided they are in 'search_set') plus their neighbors. The neighbor search can be limited to the optional search set. The complexity is linear in the sum of the sizes of 'elements' and 'search_set'.

Definition at line 2342 of file ncmesh.cpp.

NCMesh::Element * mfem::NCMesh::NewHexahedron	(	Node *	n0,
		Node *	n1,
		Node *	n2,
		Node *	n3,
		Node *	n4,
		Node *	n5,
		Node *	n6,
		Node *	n7,
		int	attr,
		int	fattr0,
		int	fattr1,
		int	fattr2,
		int	fattr3,
		int	fattr4,
		int	fattr5
	)

protected

Definition at line 491 of file ncmesh.cpp.

mfem::Element * mfem::NCMesh::NewMeshElement ( int geom ) const

protected

Definition at line 1583 of file ncmesh.cpp.

NCMesh::Element * mfem::NCMesh::NewQuadrilateral	(	Node *	n0,
		Node *	n1,
		Node *	n2,
		Node *	n3,
		int	attr,
		int	eattr0,
		int	eattr1,
		int	eattr2,
		int	eattr3
	)

protected

Definition at line 519 of file ncmesh.cpp.

NCMesh::Element * mfem::NCMesh::NewTriangle	(	Node *	n0,
		Node *	n1,
		Node *	n2,
		int	attr,
		int	eattr0,
		int	eattr1,
		int	eattr2
	)

protected

Definition at line 546 of file ncmesh.cpp.

NCMesh::Vertex * mfem::NCMesh::NewVertex	(	Node *	v1,
		Node *	v2
	)

protected

Definition at line 570 of file ncmesh.cpp.

bool mfem::NCMesh::NodeSetX1	(	Node *	node,
		Node **	n
	)

inlineprotected

Definition at line 620 of file ncmesh.cpp.

bool mfem::NCMesh::NodeSetX2	(	Node *	node,
		Node **	n
	)

inlineprotected

Definition at line 623 of file ncmesh.cpp.

bool mfem::NCMesh::NodeSetY1	(	Node *	node,
		Node **	n
	)

inlineprotected

Definition at line 626 of file ncmesh.cpp.

bool mfem::NCMesh::NodeSetY2	(	Node *	node,
		Node **	n
	)

inlineprotected

Definition at line 629 of file ncmesh.cpp.

bool mfem::NCMesh::NodeSetZ1	(	Node *	node,
		Node **	n
	)

inlineprotected

Definition at line 632 of file ncmesh.cpp.

bool mfem::NCMesh::NodeSetZ2	(	Node *	node,
		Node **	n
	)

inlineprotected

Definition at line 635 of file ncmesh.cpp.

void mfem::NCMesh::OnMeshUpdated ( Mesh * mesh )

protectedvirtual

Get edge and face numbering from 'mesh' (i.e., set all Edge::index and Face::index) after a new mesh was created from us.

Reimplemented in mfem::ParNCMesh.

Definition at line 1671 of file ncmesh.cpp.

NCMesh::Node * mfem::NCMesh::PeekAltParents	(	Node *	v1,
		Node *	v2
	)

protected

Definition at line 424 of file ncmesh.cpp.

void mfem::NCMesh::PrintCoarseElements ( std::ostream & out ) const

I/O: Print the "coarse_elements" section of the mesh file (ver. >= 1.1).

Definition at line 3211 of file ncmesh.cpp.

int mfem::NCMesh::PrintElements	(	std::ostream &	out,
		Element *	elem,
		int &	coarse_id
	)		const

protected

Definition at line 3182 of file ncmesh.cpp.

void mfem::NCMesh::PrintMemoryDetail ( ) const

Definition at line 3359 of file ncmesh.cpp.

void mfem::NCMesh::PrintVertexParents ( std::ostream & out ) const

I/O: Print the "vertex_parents" section of the mesh file (ver. >= 1.1).

Definition at line 3120 of file ncmesh.cpp.

void mfem::NCMesh::RefElementNodes ( Element * elem )

protected

Definition at line 306 of file ncmesh.cpp.

void mfem::NCMesh::Refine ( const Array< Refinement > & refinements )

virtual

Perform the given batch of refinements. Please note that in the presence of anisotropic splits additional refinements may be necessary to keep the mesh consistent. However, the function always performs at least the requested refinements.

Reimplemented in mfem::ParNCMesh.

Definition at line 1169 of file ncmesh.cpp.

void mfem::NCMesh::RefineElement	(	Element *	elem,
		char	ref_type
	)

protected

Definition at line 756 of file ncmesh.cpp.

void mfem::NCMesh::RegisterFaces	(	Element *	elem,
		int *	fattr = `NULL`
	)

protected

Definition at line 399 of file ncmesh.cpp.

int mfem::NCMesh::ReorderFacePointMat	(	Node *	v0,
		Node *	v1,
		Node *	v2,
		Node *	v3,
		Element *	elem,
		DenseMatrix &	mat
	)		const

protected

Definition at line 1795 of file ncmesh.cpp.

void mfem::NCMesh::SetDerefMatrixCodes	(	Element *	parent,
		Array< Element * > &	coarse
	)

protected

Definition at line 1451 of file ncmesh.cpp.

void mfem::NCMesh::SetVertexPositions ( const Array< mfem::Vertex > & vertices )

I/O: Set positions of all vertices (used by mesh loader).

Definition at line 3168 of file ncmesh.cpp.

int mfem::NCMesh::SpaceDimension ( ) const

inline

Definition at line 97 of file ncmesh.hpp.

void mfem::NCMesh::TraverseEdge	(	Node *	v0,
		Node *	v1,
		double	t0,
		double	t1,
		int	flags,
		int	level
	)

protected

Definition at line 1951 of file ncmesh.cpp.

void mfem::NCMesh::TraverseFace	(	Node *	v0,
		Node *	v1,
		Node *	v2,
		Node *	v3,
		const PointMatrix &	pm,
		int	level
	)

protected

Definition at line 1827 of file ncmesh.cpp.

void mfem::NCMesh::TraverseRefinements	(	Element *	elem,
		int	coarse_index,
		std::string &	ref_path,
		RefPathMap &	map
	)

protected

Definition at line 2746 of file ncmesh.cpp.

void mfem::NCMesh::UnrefElementNodes ( Element * elem )

protected

Definition at line 335 of file ncmesh.cpp.

void mfem::NCMesh::Update ( )

protectedvirtual

Apart from the primary data structure, which is the element/node/face hierarchy, there is secondary data that is derived from the primary data and needs to be updated when the primary data changes. Update() takes care of that and needs to be called after refinement and derefinement. Secondary data includes: leaf_elements, vertex_nodeId, face_list, edge_list, and everything in ParNCMesh.

Reimplemented in mfem::ParNCMesh.

Definition at line 187 of file ncmesh.cpp.

void mfem::NCMesh::UpdateElementToVertexTable ( )

inlineprotected

Definition at line 579 of file ncmesh.hpp.

void mfem::NCMesh::UpdateLeafElements ( )

protected

Definition at line 1560 of file ncmesh.cpp.

void mfem::NCMesh::UpdateVertices ( )

protectedvirtual

update Vertex::index and vertex_nodeId

Reimplemented in mfem::ParNCMesh.

Definition at line 1469 of file ncmesh.cpp.

Friends And Related Function Documentation

friend class Mesh

friend

Definition at line 262 of file ncmesh.hpp.

friend class ParNCMesh

friend

Definition at line 722 of file ncmesh.hpp.

Member Data Documentation

Array<Node*> mfem::NCMesh::boundary_edges

protected

subset of all edges, set by BuildEdgeList

Definition at line 438 of file ncmesh.hpp.

Array<Face*> mfem::NCMesh::boundary_faces

protected

subset of all faces, set by BuildFaceList

Definition at line 437 of file ncmesh.hpp.

Array<Element*> mfem::NCMesh::coarse_elements

protected

state of leaf_elements before Refine(), set by MarkCoarseLevel()

Definition at line 671 of file ncmesh.hpp.

Table mfem::NCMesh::derefinements

protected

possible derefinements, see GetDerefinementTable

Definition at line 467 of file ncmesh.hpp.

int mfem::NCMesh::Dim

protected

Definition at line 276 of file ncmesh.hpp.

NCList mfem::NCMesh::edge_list

protected

lazy-initialized list of edges, see GetEdgeList

Definition at line 435 of file ncmesh.hpp.

Table mfem::NCMesh::element_vertex

protected

leaf-element to vertex table, see FindSetNeighbors

Definition at line 440 of file ncmesh.hpp.

NCList mfem::NCMesh::face_list

protected

lazy-initialized list of faces, see GetFaceList

Definition at line 434 of file ncmesh.hpp.

HashTable<Face> mfem::NCMesh::faces

protected

Definition at line 417 of file ncmesh.hpp.

NCMesh::GeomInfo mfem::NCMesh::GI

static

Definition at line 712 of file ncmesh.hpp.

bool mfem::NCMesh::Iso

protected

true if the mesh only contains isotropic refinements

Definition at line 277 of file ncmesh.hpp.

Array<Element*> mfem::NCMesh::leaf_elements

protected

Definition at line 430 of file ncmesh.hpp.

HashTable<Node> mfem::NCMesh::nodes

protected

Definition at line 416 of file ncmesh.hpp.

int mfem::NCMesh::num_vertices

protected

width of the table

Definition at line 441 of file ncmesh.hpp.

NCMesh::PointMatrix mfem::NCMesh::pm_hex_identity

staticprotected

Definition at line 656 of file ncmesh.hpp.

NCMesh::PointMatrix mfem::NCMesh::pm_quad_identity

staticprotected

Definition at line 655 of file ncmesh.hpp.

NCMesh::PointMatrix mfem::NCMesh::pm_tri_identity

staticprotected

Definition at line 654 of file ncmesh.hpp.

Array<ElemRefType> mfem::NCMesh::ref_stack

protected

stack of scheduled refinements (temporary)

Definition at line 465 of file ncmesh.hpp.

Array<Element*> mfem::NCMesh::root_elements

protected

Definition at line 414 of file ncmesh.hpp.

int mfem::NCMesh::spaceDim

protected

dimensions of the elements and the vertex coordinates

Definition at line 276 of file ncmesh.hpp.

CoarseFineTransformations mfem::NCMesh::transforms

protected

storage for data returned by Get[De]RefinementTransforms()

Definition at line 668 of file ncmesh.hpp.

Array<int> mfem::NCMesh::vertex_nodeId

protected

Definition at line 432 of file ncmesh.hpp.

The documentation for this class was generated from the following files:

Classes

Public Member Functions

Static Public Attributes

Protected Types

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Static Protected Attributes

Friends

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation