ex27.cpp

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//                                MFEM Example 27
//
// Compile with: make ex27
//
// Sample runs:  ex27
//               ex27 -dg
//               ex27 -dg -dbc 8 -nbc -2
//               ex27 -rbc-a 1 -rbc-b 8
//
// Description:  This example code demonstrates the use of MFEM to define a
//               simple finite element discretization of the Laplace problem
//               -Delta u = 0 with a variety of boundary conditions.
//
//               Specifically, we discretize using a FE space of the specified
//               order using a continuous or discontinuous space. We then apply
//               Dirichlet, Neumann (both homogeneous and inhomogeneous), Robin,
//               and Periodic boundary conditions on different portions of a
//               predefined mesh.
//
//               The predefined mesh consists of a rectangle with two holes
//               removed (see below). The narrow ends of the mesh are connected
//               to form a Periodic boundary condition. The lower edge (tagged
//               with attribute 1) receives an inhomogeneous Neumann boundary
//               condition. A Robin boundary condition is applied to upper edge
//               (attribute 2). The circular hole on the left (attribute 3)
//               enforces a Dirichlet boundary condition. Finally, a natural
//               boundary condition, or homogeneous Neumann BC, is applied to
//               the circular hole on the right (attribute 4).
//
//                    Attribute 3    ^ y  Attribute 2
//                          \        |      /
//                       +-----------+-----------+
//                       |    \_     |     _     |
//                       |    / \    |    / \    |
//                    <--+---+---+---+---+---+---+--> x
//                       |    \_/    |    \_/    |
//                       |           |      \    |
//                       +-----------+-----------+       (hole radii are
//                            /      |        \            adjustable)
//                    Attribute 1    v    Attribute 4
//
//               The boundary conditions are defined as (where u is the solution
//               field):
//
//                  Dirichlet: u = d
//                  Neumann:   n.Grad(u) = g
//                  Robin:     n.Grad(u) + a u = b
//
//               The user can adjust the values of 'd', 'g', 'a', and 'b' with
//               command line options.
//
//               This example highlights the differing implementations of
//               boundary conditions with continuous and discontinuous Galerkin
//               formulations of the Laplace problem.
//
//               We recommend viewing Examples 1 and 14 before viewing this
//               example.

#include "mfem.hpp"
#include <fstream>
#include <iostream>

using namespace std;
using namespace mfem;

static double a_ = 0.2;

// Normal to hole with boundary attribute 4
void n4Vec(const Vector &x, Vector &n) { n = x; n[0] -= 0.5; n /= -n.Norml2(); }

Mesh * GenerateSerialMesh(int ref);

// Compute the average value of alpha*n.Grad(sol) + beta*sol over the boundary
// attributes marked in bdr_marker. Also computes the L2 norm of
// alpha*n.Grad(sol) + beta*sol - gamma over the same boundary.
double IntegrateBC(const GridFunction &sol, const Array<int> &bdr_marker,
                   double alpha, double beta, double gamma,
                   double &error);

int main(int argc, char *argv[])
{
   // 1. Parse command-line options.
   int ser_ref_levels = 2;
   int order = 1;
   double sigma = -1.0;
   double kappa = -1.0;
   bool h1 = true;
   bool visualization = true;

   double mat_val = 1.0;
   double dbc_val = 0.0;
   double nbc_val = 1.0;
   double rbc_a_val = 1.0; // du/dn + a * u = b
   double rbc_b_val = 1.0;

   OptionsParser args(argc, argv);
   args.AddOption(&h1, "-h1", "--continuous", "-dg", "--discontinuous",
                  "Select continuous \"H1\" or discontinuous \"DG\" basis.");
   args.AddOption(&order, "-o", "--order",
                  "Finite element order (polynomial degree) or -1 for"
                  " isoparametric space.");
   args.AddOption(&sigma, "-s", "--sigma",
                  "One of the two DG penalty parameters, typically +1/-1."
                  " See the documentation of class DGDiffusionIntegrator.");
   args.AddOption(&kappa, "-k", "--kappa",
                  "One of the two DG penalty parameters, should be positive."
                  " Negative values are replaced with (order+1)^2.");
   args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
                  "Number of times to refine the mesh uniformly in serial.");
   args.AddOption(&mat_val, "-mat", "--material-value",
                  "Constant value for material coefficient "
                  "in the Laplace operator.");
   args.AddOption(&dbc_val, "-dbc", "--dirichlet-value",
                  "Constant value for Dirichlet Boundary Condition.");
   args.AddOption(&nbc_val, "-nbc", "--neumann-value",
                  "Constant value for Neumann Boundary Condition.");
   args.AddOption(&rbc_a_val, "-rbc-a", "--robin-a-value",
                  "Constant 'a' value for Robin Boundary Condition: "
                  "du/dn + a * u = b.");
   args.AddOption(&rbc_b_val, "-rbc-b", "--robin-b-value",
                  "Constant 'b' value for Robin Boundary Condition: "
                  "du/dn + a * u = b.");
   args.AddOption(&a_, "-a", "--radius",
                  "Radius of holes in the mesh.");
   args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                  "--no-visualization",
                  "Enable or disable GLVis visualization.");
   args.Parse();
   if (!args.Good())
   {
      args.PrintUsage(mfem::out);
      return 1;
   }
   if (kappa < 0 && !h1)
   {
      kappa = (order+1)*(order+1);
   }
   args.PrintOptions(mfem::out);

   if (a_ < 0.01)
   {
      mfem::out << "Hole radius too small, resetting to 0.01.\n";
      a_ = 0.01;
   }
   if (a_ > 0.49)
   {
      mfem::out << "Hole radius too large, resetting to 0.49.\n";
      a_ = 0.49;
   }

   // 2. Construct the (serial) mesh and refine it if requested.
   Mesh *mesh = GenerateSerialMesh(ser_ref_levels);
   int dim = mesh->Dimension();

   // 3. Define a finite element space on the serial mesh. Here we use either
   //    continuous Lagrange finite elements or discontinuous Galerkin finite
   //    elements of the specified order.
   FiniteElementCollection *fec =
      h1 ? (FiniteElementCollection*)new H1_FECollection(order, dim) :
      (FiniteElementCollection*)new DG_FECollection(order, dim);
   FiniteElementSpace fespace(mesh, fec);
   int size = fespace.GetTrueVSize();
   mfem::out << "Number of finite element unknowns: " << size << endl;

   // 4. Create "marker arrays" to define the portions of boundary associated
   //    with each type of boundary condition. These arrays have an entry
   //    corresponding to each boundary attribute.  Placing a '1' in entry i
   //    marks attribute i+1 as being active, '0' is inactive.
   Array<int> nbc_bdr(mesh->bdr_attributes.Max());
   Array<int> rbc_bdr(mesh->bdr_attributes.Max());
   Array<int> dbc_bdr(mesh->bdr_attributes.Max());

   nbc_bdr = 0; nbc_bdr[0] = 1;
   rbc_bdr = 0; rbc_bdr[1] = 1;
   dbc_bdr = 0; dbc_bdr[2] = 1;

   Array<int> ess_tdof_list(0);
   if (h1 && mesh->bdr_attributes.Size())
   {
      // For a continuous basis the linear system must be modified to enforce an
      // essential (Dirichlet) boundary condition. In the DG case this is not
      // necessary as the boundary condition will only be enforced weakly.
      fespace.GetEssentialTrueDofs(dbc_bdr, ess_tdof_list);
   }

   // 5. Setup the various coefficients needed for the Laplace operator and the
   //    various boundary conditions. In general these coefficients could be
   //    functions of position but here we use only constants.
   ConstantCoefficient matCoef(mat_val);
   ConstantCoefficient dbcCoef(dbc_val);
   ConstantCoefficient nbcCoef(nbc_val);
   ConstantCoefficient rbcACoef(rbc_a_val);
   ConstantCoefficient rbcBCoef(rbc_b_val);

   // Since the n.Grad(u) terms arise by integrating -Div(m Grad(u)) by parts we
   // must introduce the coefficient 'm' into the boundary conditions.
   // Therefore, in the case of the Neumann BC, we actually enforce m n.Grad(u)
   // = m g rather than simply n.Grad(u) = g.
   ProductCoefficient m_nbcCoef(matCoef, nbcCoef);
   ProductCoefficient m_rbcACoef(matCoef, rbcACoef);
   ProductCoefficient m_rbcBCoef(matCoef, rbcBCoef);

   // 6. Define the solution vector u as a finite element grid function
   //    corresponding to fespace. Initialize u with initial guess of zero.
   GridFunction u(&fespace);
   u = 0.0;

   // 7. Set up the bilinear form a(.,.) on the finite element space
   //    corresponding to the Laplacian operator -Delta, by adding the Diffusion
   //    domain integrator.
   BilinearForm a(&fespace);
   a.AddDomainIntegrator(new DiffusionIntegrator(matCoef));
   if (h1)
   {
      // Add a Mass integrator on the Robin boundary
      a.AddBoundaryIntegrator(new MassIntegrator(m_rbcACoef), rbc_bdr);
   }
   else
   {
      // Add the interfacial portion of the Laplace operator
      a.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(matCoef,
                                                            sigma, kappa));

      // Counteract the n.Grad(u) term on the Dirichlet portion of the boundary
      a.AddBdrFaceIntegrator(new DGDiffusionIntegrator(matCoef, sigma, kappa),
                             dbc_bdr);

      // Augment the n.Grad(u) term with a*u on the Robin portion of boundary
      a.AddBdrFaceIntegrator(new BoundaryMassIntegrator(m_rbcACoef),
                             rbc_bdr);
   }
   a.Assemble();

   // 8. Assemble the linear form for the right hand side vector.
   LinearForm b(&fespace);

   if (h1)
   {
      // Set the Dirichlet values in the solution vector
      u.ProjectBdrCoefficient(dbcCoef, dbc_bdr);

      // Add the desired value for n.Grad(u) on the Neumann boundary
      b.AddBoundaryIntegrator(new BoundaryLFIntegrator(m_nbcCoef), nbc_bdr);

      // Add the desired value for n.Grad(u) + a*u on the Robin boundary
      b.AddBoundaryIntegrator(new BoundaryLFIntegrator(m_rbcBCoef), rbc_bdr);
   }
   else
   {
      // Add the desired value for the Dirichlet boundary
      b.AddBdrFaceIntegrator(new DGDirichletLFIntegrator(dbcCoef, matCoef,
                                                         sigma, kappa),
                             dbc_bdr);

      // Add the desired value for n.Grad(u) on the Neumann boundary
      b.AddBdrFaceIntegrator(new BoundaryLFIntegrator(m_nbcCoef),
                             nbc_bdr);

      // Add the desired value for n.Grad(u) + a*u on the Robin boundary
      b.AddBdrFaceIntegrator(new BoundaryLFIntegrator(m_rbcBCoef),
                             rbc_bdr);
   }
   b.Assemble();

   // 9. Construct the linear system.
   OperatorPtr A;
   Vector B, X;
   a.FormLinearSystem(ess_tdof_list, u, b, A, X, B);

#ifndef MFEM_USE_SUITESPARSE
   // 10. Define a simple symmetric Gauss-Seidel preconditioner and use it to
   //     solve the system AX=B with PCG in the symmetric case, and GMRES in the
   //     non-symmetric one.
   {
      GSSmoother M((SparseMatrix&)(*A));
      if (sigma == -1.0)
      {
         PCG(*A, M, B, X, 1, 500, 1e-12, 0.0);
      }
      else
      {
         GMRES(*A, M, B, X, 1, 500, 10, 1e-12, 0.0);
      }
   }
#else
   // 11. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the
   //     system.
   UMFPackSolver umf_solver;
   umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
   umf_solver.SetOperator(*A);
   umf_solver.Mult(B, X);
#endif

   // 12. Recover the grid function corresponding to U. This is the local finite
   //     element solution.
   a.RecoverFEMSolution(X, b, u);

   // 13. Compute the various boundary integrals.
   mfem::out << endl
             << "Verifying boundary conditions" << endl
             << "=============================" << endl;
   {
      // Integrate the solution on the Dirichlet boundary and compare to the
      // expected value.
      double error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);

      bool hom_dbc = (dbc_val == 0.0);
      error /=  hom_dbc ? 1.0 : fabs(dbc_val);
      mfem::out << "Average of solution on Gamma_dbc:\t"
                << avg << ", \t"
                << (hom_dbc ? "absolute" : "relative")
                << " error " << error << endl;
   }
   {
      // Integrate n.Grad(u) on the inhomogeneous Neumann boundary and compare
      // to the expected value.
      double error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);

      bool hom_nbc = (nbc_val == 0.0);
      error /=  hom_nbc ? 1.0 : fabs(nbc_val);
      mfem::out << "Average of n.Grad(u) on Gamma_nbc:\t"
                << avg << ", \t"
                << (hom_nbc ? "absolute" : "relative")
                << " error " << error << endl;
   }
   {
      // Integrate n.Grad(u) on the homogeneous Neumann boundary and compare to
      // the expected value of zero.
      Array<int> nbc0_bdr(mesh->bdr_attributes.Max());
      nbc0_bdr = 0;
      nbc0_bdr[3] = 1;

      double error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);

      bool hom_nbc = true;
      mfem::out << "Average of n.Grad(u) on Gamma_nbc0:\t"
                << avg << ", \t"
                << (hom_nbc ? "absolute" : "relative")
                << " error " << error << endl;
   }
   {
      // Integrate n.Grad(u) + a * u on the Robin boundary and compare to the
      // expected value.
      double error;
      double avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, error);

      bool hom_rbc = (rbc_b_val == 0.0);
      error /=  hom_rbc ? 1.0 : fabs(rbc_b_val);
      mfem::out << "Average of n.Grad(u)+a*u on Gamma_rbc:\t"
                << avg << ", \t"
                << (hom_rbc ? "absolute" : "relative")
                << " error " << error << endl;
   }

   // 14. Save the refined mesh and the solution. This output can be viewed
   //     later using GLVis: "glvis -m refined.mesh -g sol.gf".
   {
      ofstream mesh_ofs("refined.mesh");
      mesh_ofs.precision(8);
      mesh->Print(mesh_ofs);
      ofstream sol_ofs("sol.gf");
      sol_ofs.precision(8);
      u.Save(sol_ofs);
   }

   // 15. Send the solution by socket to a GLVis server.
   if (visualization)
   {
      string title_str = h1 ? "H1" : "DG";
      char vishost[] = "localhost";
      int  visport   = 19916;
      socketstream sol_sock(vishost, visport);
      sol_sock.precision(8);
      sol_sock << "solution\n" << *mesh << u
               << "window_title '" << title_str << " Solution'"
               << " keys 'mmc'" << flush;
   }

   // 16. Free the used memory.
   delete fec;
   delete mesh;

   return 0;
}

void quad_trans(double u, double v, double &x, double &y, bool log = false)
{
   double a = a_; // Radius of disc

   double d = 4.0 * a * (M_SQRT2 - 2.0 * a) * (1.0 - 2.0 * v);

   double v0 = (1.0 + M_SQRT2) * (M_SQRT2 * a - 2.0 * v) *
               ((4.0 - 3 * M_SQRT2) * a +
                (8.0 * (M_SQRT2 - 1.0) * a - 2.0) * v) / d;

   double r = 2.0 * ((M_SQRT2 - 1.0) * a * a * (1.0 - 4.0 *v) +
                     2.0 * (1.0 + M_SQRT2 *
                            (1.0 + 2.0 * (2.0 * a - M_SQRT2 - 1.0) * a)) * v * v
                    ) / d;

   double t = asin(v / r) * u / v;
   if (log)
   {
      mfem::out << "u, v, r, v0, t "
                << u << " " << v << " " << r << " " << v0 << " " << t
                << endl;
   }
   x = r * sin(t);
   y = r * cos(t) - v0;
}

void trans(const Vector &u, Vector &x)
{
   double tol = 1e-4;

   if (u[1] > 0.5 - tol || u[1] < -0.5 + tol)
   {
      x = u;
      return;
   }
   if (u[0] > 1.0 - tol || u[0] < -1.0 + tol || fabs(u[0]) < tol)
   {
      x = u;
      return;
   }

   if (u[0] > 0.0)
   {
      if (u[1] > fabs(u[0] - 0.5))
      {
         quad_trans(u[0] - 0.5, u[1], x[0], x[1]);
         x[0] += 0.5;
         return;
      }
      if (u[1] < -fabs(u[0] - 0.5))
      {
         quad_trans(u[0] - 0.5, -u[1], x[0], x[1]);
         x[0] += 0.5;
         x[1] *= -1.0;
         return;
      }
      if (u[0] - 0.5 > fabs(u[1]))
      {
         quad_trans(u[1], u[0] - 0.5, x[1], x[0]);
         x[0] += 0.5;
         return;
      }
      if (u[0] - 0.5 < -fabs(u[1]))
      {
         quad_trans(u[1], 0.5 - u[0], x[1], x[0]);
         x[0] *= -1.0;
         x[0] += 0.5;
         return;
      }
   }
   else
   {
      if (u[1] > fabs(u[0] + 0.5))
      {
         quad_trans(u[0] + 0.5, u[1], x[0], x[1]);
         x[0] -= 0.5;
         return;
      }
      if (u[1] < -fabs(u[0] + 0.5))
      {
         quad_trans(u[0] + 0.5, -u[1], x[0], x[1]);
         x[0] -= 0.5;
         x[1] *= -1.0;
         return;
      }
      if (u[0] + 0.5 > fabs(u[1]))
      {
         quad_trans(u[1], u[0] + 0.5, x[1], x[0]);
         x[0] -= 0.5;
         return;
      }
      if (u[0] + 0.5 < -fabs(u[1]))
      {
         quad_trans(u[1], -0.5 - u[0], x[1], x[0]);
         x[0] *= -1.0;
         x[0] -= 0.5;
         return;
      }
   }
   x = u;
}

Mesh * GenerateSerialMesh(int ref)
{
   Mesh * mesh = new Mesh(2, 29, 16, 24, 2);

   int vi[4];

   for (int i=0; i<2; i++)
   {
      int o = 13 * i;
      vi[0] = o + 0; vi[1] = o + 3; vi[2] = o + 4; vi[3] = o + 1;
      mesh->AddQuad(vi);

      vi[0] = o + 1; vi[1] = o + 4; vi[2] = o + 5; vi[3] = o + 2;
      mesh->AddQuad(vi);

      vi[0] = o + 5; vi[1] = o + 8; vi[2] = o + 9; vi[3] = o + 2;
      mesh->AddQuad(vi);

      vi[0] = o + 8; vi[1] = o + 12; vi[2] = o + 15; vi[3] = o + 9;
      mesh->AddQuad(vi);

      vi[0] = o + 11; vi[1] = o + 14; vi[2] = o + 15; vi[3] = o + 12;
      mesh->AddQuad(vi);

      vi[0] = o + 10; vi[1] = o + 13; vi[2] = o + 14; vi[3] = o + 11;
      mesh->AddQuad(vi);

      vi[0] = o + 6; vi[1] = o + 13; vi[2] = o + 10; vi[3] = o + 7;
      mesh->AddQuad(vi);

      vi[0] = o + 0; vi[1] = o + 6; vi[2] = o + 7; vi[3] = o + 3;
      mesh->AddQuad(vi);
   }

   vi[0] =  0; vi[1] =  6; mesh->AddBdrSegment(vi, 1);
   vi[0] =  6; vi[1] = 13; mesh->AddBdrSegment(vi, 1);
   vi[0] = 13; vi[1] = 19; mesh->AddBdrSegment(vi, 1);
   vi[0] = 19; vi[1] = 26; mesh->AddBdrSegment(vi, 1);

   vi[0] = 28; vi[1] = 22; mesh->AddBdrSegment(vi, 2);
   vi[0] = 22; vi[1] = 15; mesh->AddBdrSegment(vi, 2);
   vi[0] = 15; vi[1] =  9; mesh->AddBdrSegment(vi, 2);
   vi[0] =  9; vi[1] =  2; mesh->AddBdrSegment(vi, 2);

   for (int i=0; i<2; i++)
   {
      int o = 13 * i;
      vi[0] = o +  7; vi[1] = o +  3; mesh->AddBdrSegment(vi, 3 + i);
      vi[0] = o + 10; vi[1] = o +  7; mesh->AddBdrSegment(vi, 3 + i);
      vi[0] = o + 11; vi[1] = o + 10; mesh->AddBdrSegment(vi, 3 + i);
      vi[0] = o + 12; vi[1] = o + 11; mesh->AddBdrSegment(vi, 3 + i);
      vi[0] = o +  8; vi[1] = o + 12; mesh->AddBdrSegment(vi, 3 + i);
      vi[0] = o +  5; vi[1] = o +  8; mesh->AddBdrSegment(vi, 3 + i);
      vi[0] = o +  4; vi[1] = o +  5; mesh->AddBdrSegment(vi, 3 + i);
      vi[0] = o +  3; vi[1] = o +  4; mesh->AddBdrSegment(vi, 3 + i);
   }

   double d[2];
   double a = a_ / M_SQRT2;

   d[0] = -1.0; d[1] = -0.5; mesh->AddVertex(d);
   d[0] = -1.0; d[1] =  0.0; mesh->AddVertex(d);
   d[0] = -1.0; d[1] =  0.5; mesh->AddVertex(d);

   d[0] = -0.5 - a; d[1] =   -a; mesh->AddVertex(d);
   d[0] = -0.5 - a; d[1] =  0.0; mesh->AddVertex(d);
   d[0] = -0.5 - a; d[1] =    a; mesh->AddVertex(d);

   d[0] = -0.5; d[1] = -0.5; mesh->AddVertex(d);
   d[0] = -0.5; d[1] =   -a; mesh->AddVertex(d);
   d[0] = -0.5; d[1] =    a; mesh->AddVertex(d);
   d[0] = -0.5; d[1] =  0.5; mesh->AddVertex(d);

   d[0] = -0.5 + a; d[1] =   -a; mesh->AddVertex(d);
   d[0] = -0.5 + a; d[1] =  0.0; mesh->AddVertex(d);
   d[0] = -0.5 + a; d[1] =    a; mesh->AddVertex(d);

   d[0] =  0.0; d[1] = -0.5; mesh->AddVertex(d);
   d[0] =  0.0; d[1] =  0.0; mesh->AddVertex(d);
   d[0] =  0.0; d[1] =  0.5; mesh->AddVertex(d);

   d[0] =  0.5 - a; d[1] =   -a; mesh->AddVertex(d);
   d[0] =  0.5 - a; d[1] =  0.0; mesh->AddVertex(d);
   d[0] =  0.5 - a; d[1] =    a; mesh->AddVertex(d);

   d[0] =  0.5; d[1] = -0.5; mesh->AddVertex(d);
   d[0] =  0.5; d[1] =   -a; mesh->AddVertex(d);
   d[0] =  0.5; d[1] =    a; mesh->AddVertex(d);
   d[0] =  0.5; d[1] =  0.5; mesh->AddVertex(d);

   d[0] =  0.5 + a; d[1] =   -a; mesh->AddVertex(d);
   d[0] =  0.5 + a; d[1] =  0.0; mesh->AddVertex(d);
   d[0] =  0.5 + a; d[1] =    a; mesh->AddVertex(d);

   d[0] =  1.0; d[1] = -0.5; mesh->AddVertex(d);
   d[0] =  1.0; d[1] =  0.0; mesh->AddVertex(d);
   d[0] =  1.0; d[1] =  0.5; mesh->AddVertex(d);

   mesh->FinalizeTopology();

   mesh->SetCurvature(1, true);

   // Stitch the ends of the stack together
   {
      Array<int> v2v(mesh->GetNV());
      for (int i = 0; i < v2v.Size() - 3; i++)
      {
         v2v[i] = i;
      }
      // identify vertices on the narrow ends of the rectangle
      v2v[v2v.Size() - 3] = 0;
      v2v[v2v.Size() - 2] = 1;
      v2v[v2v.Size() - 1] = 2;

      // renumber elements
      for (int i = 0; i < mesh->GetNE(); i++)
      {
         Element *el = mesh->GetElement(i);
         int *v = el->GetVertices();
         int nv = el->GetNVertices();
         for (int j = 0; j < nv; j++)
         {
            v[j] = v2v[v[j]];
         }
      }
      // renumber boundary elements
      for (int i = 0; i < mesh->GetNBE(); i++)
      {
         Element *el = mesh->GetBdrElement(i);
         int *v = el->GetVertices();
         int nv = el->GetNVertices();
         for (int j = 0; j < nv; j++)
         {
            v[j] = v2v[v[j]];
         }
      }
      mesh->RemoveUnusedVertices();
      mesh->RemoveInternalBoundaries();
   }
   mesh->SetCurvature(3, true);

   for (int l = 0; l < ref; l++)
   {
      mesh->UniformRefinement();
   }

   mesh->Transform(trans);

   return mesh;
}

double IntegrateBC(const GridFunction &x, const Array<int> &bdr,
                   double alpha, double beta, double gamma,
                   double &error)
{
   double nrm = 0.0;
   double avg = 0.0;
   error = 0.0;

   const bool a_is_zero = alpha == 0.0;
   const bool b_is_zero = beta == 0.0;

   const FiniteElementSpace &fes = *x.FESpace();
   MFEM_ASSERT(fes.GetVDim() == 1, "");
   Mesh &mesh = *fes.GetMesh();
   Vector shape, loc_dofs, w_nor;
   DenseMatrix dshape;
   Array<int> dof_ids;
   for (int i = 0; i < mesh.GetNBE(); i++)
   {
      if (bdr[mesh.GetBdrAttribute(i)-1] == 0) { continue; }

      FaceElementTransformations *FTr = mesh.GetBdrFaceTransformations(i);
      if (FTr == nullptr) { continue; }

      const FiniteElement &fe = *fes.GetFE(FTr->Elem1No);
      MFEM_ASSERT(fe.GetMapType() == FiniteElement::VALUE, "");
      const int int_order = 2*fe.GetOrder() + 3;
      const IntegrationRule &ir = IntRules.Get(FTr->FaceGeom, int_order);

      fes.GetElementDofs(FTr->Elem1No, dof_ids);
      x.GetSubVector(dof_ids, loc_dofs);
      if (!a_is_zero)
      {
         const int sdim = FTr->Face->GetSpaceDim();
         w_nor.SetSize(sdim);
         dshape.SetSize(fe.GetDof(), sdim);
      }
      if (!b_is_zero)
      {
         shape.SetSize(fe.GetDof());
      }
      for (int j = 0; j < ir.GetNPoints(); j++)
      {
         const IntegrationPoint &ip = ir.IntPoint(j);
         IntegrationPoint eip;
         FTr->Loc1.Transform(ip, eip);
         FTr->Face->SetIntPoint(&ip);
         double face_weight = FTr->Face->Weight();
         double val = 0.0;
         if (!a_is_zero)
         {
            FTr->Elem1->SetIntPoint(&eip);
            fe.CalcPhysDShape(*FTr->Elem1, dshape);
            CalcOrtho(FTr->Face->Jacobian(), w_nor);
            val += alpha * dshape.InnerProduct(w_nor, loc_dofs) / face_weight;
         }
         if (!b_is_zero)
         {
            fe.CalcShape(eip, shape);
            val += beta * (shape * loc_dofs);
         }

         // Measure the length of the boundary
         nrm += ip.weight * face_weight;

         // Integrate alpha * n.Grad(x) + beta * x
         avg += val * ip.weight * face_weight;

         // Integrate |alpha * n.Grad(x) + beta * x - gamma|^2
         val -= gamma;
         error += (val*val) * ip.weight * face_weight;
      }
   }

   // Normalize by the length of the boundary
   if (std::abs(nrm) > 0.0)
   {
      error /= nrm;
      avg /= nrm;
   }

   // Compute l2 norm of the error in the boundary condition (negative
   // quadrature weights may produce negative 'error')
   error = (error >= 0.0) ? sqrt(error) : -sqrt(-error);

   // Return the average value of alpha * n.Grad(x) + beta * x
   return avg;
}