#include <sundials.hpp>

Inheritance diagram for mfem::CVODESSolver:

Collaboration diagram for mfem::CVODESSolver:

Public Member Functions
	CVODESSolver (int lmm)

	CVODESSolver (MPI_Comm comm, int lmm)

void	Init (TimeDependentAdjointOperator &f_)

void	InitB (TimeDependentAdjointOperator &f_)
	Initialize the adjoint problem. More...

virtual void	Step (Vector &x, double &t, double &dt)

virtual void	StepB (Vector &w, double &t, double &dt)
	Solve one adjoint time step. More...

void	SetWFTolerances (EWTFunction func)
	Set multiplicative error weights. More...

void	InitQuadIntegration (mfem::Vector &q0, double reltolQ=1e-3, double abstolQ=1e-8)

void	InitQuadIntegrationB (mfem::Vector &qB0, double reltolQB=1e-3, double abstolQB=1e-8)
	Initialize Quadrature Integration (Adjoint) More...

void	InitAdjointSolve (int steps, int interpolation)
	Initialize Adjoint. More...

void	SetMaxNStepsB (int mxstepsB)
	Set the maximum number of backward steps. More...

long	GetNumSteps ()
	Get Number of Steps for ForwardSolve. More...

void	EvalQuadIntegration (double t, Vector &q)
	Evaluate Quadrature. More...

void	EvalQuadIntegrationB (double t, Vector &dG_dp)
	Evaluate Quadrature solution. More...

void	GetForwardSolution (double tB, mfem::Vector &yy)
	Get Interpolated Forward solution y at backward integration time tB. More...

void	UseMFEMLinearSolverB ()
	Set Linear Solver for the backward problem. More...

void	UseSundialsLinearSolverB ()
	Use built in SUNDIALS Newton solver. More...

void	SetSStolerancesB (double reltol, double abstol)
	Tolerance specification functions for the adjoint problem. More...

void	SetSVtolerancesB (double reltol, Vector abstol)
	Tolerance specification functions for the adjoint problem. More...

virtual	~CVODESSolver ()
	Destroy the associated CVODES memory and SUNDIALS objects. More...

Public Member Functions inherited from mfem::CVODESolver
	CVODESolver (int lmm)
	Construct a serial wrapper to SUNDIALS' CVODE integrator. More...

	CVODESolver (MPI_Comm comm, int lmm)
	Construct a parallel wrapper to SUNDIALS' CVODE integrator. More...

void	Init (TimeDependentOperator &f_)
	Initialize CVODE: calls CVodeCreate() to create the CVODE memory and set some defaults. More...

void	UseMFEMLinearSolver ()
	Attach the linear system setup and solve methods from the TimeDependentOperator i.e., SUNImplicitSetup() and SUNImplicitSolve() to CVODE. More...

void	UseSundialsLinearSolver ()
	Attach SUNDIALS GMRES linear solver to CVODE. More...

void	SetStepMode (int itask)
	Select the CVODE step mode: CV_NORMAL (default) or CV_ONE_STEP. More...

void	SetSStolerances (double reltol, double abstol)
	Set the scalar relative and scalar absolute tolerances. More...

void	SetSVtolerances (double reltol, Vector abstol)
	Set the scalar relative and vector of absolute tolerances. More...

void	SetRootFinder (int components, RootFunction func)
	Initialize Root Finder. More...

void	SetMaxStep (double dt_max)
	Set the maximum time step. More...

void	SetMaxNSteps (int steps)
	Set the maximum number of time steps. More...

long	GetNumSteps ()
	Get the number of internal steps taken so far. More...

void	SetMaxOrder (int max_order)
	Set the maximum method order. More...

void	PrintInfo () const
	Print various CVODE statistics. More...

virtual	~CVODESolver ()
	Destroy the associated CVODE memory and SUNDIALS objects. More...

Public Member Functions inherited from mfem::ODESolver
	ODESolver ()

virtual void	Run (Vector &x, double &t, double &dt, double tf)
	Perform time integration from time t [in] to time tf [in]. More...

virtual int	GetMaxStateSize ()
	Function for getting and setting the state vectors. More...

virtual int	GetStateSize ()

virtual const Vector &	GetStateVector (int i)

virtual void	GetStateVector (int i, Vector &state)

virtual void	SetStateVector (int i, Vector &state)

virtual	~ODESolver ()

Public Member Functions inherited from mfem::SundialsSolver
void *	GetMem () const
	Access the SUNDIALS memory structure. More...

int	GetFlag () const
	Returns the last flag returned by a call to a SUNDIALS function. More...

Static Public Member Functions
static int	LinSysSetupB (realtype t, N_Vector y, N_Vector yB, N_Vector fyB, SUNMatrix A, booleantype jok, booleantype jcur, realtype gamma, void user_data, N_Vector tmp1, N_Vector tmp2, N_Vector tmp3)
	Setup the linear system A x = b. More...

static int	LinSysSolveB (SUNLinearSolver LS, SUNMatrix A, N_Vector x, N_Vector b, realtype tol)
	Solve the linear system A x = b. More...

Static Protected Member Functions
static int	RHSQ (realtype t, const N_Vector y, N_Vector qdot, void *user_data)
	Wrapper to compute the ODE RHS Quadrature function. More...

static int	RHSB (realtype t, N_Vector y, N_Vector yB, N_Vector yBdot, void *user_dataB)
	Wrapper to compute the ODE RHS backward function. More...

static int	RHSQB (realtype t, N_Vector y, N_Vector yB, N_Vector qBdot, void *user_dataB)
	Wrapper to compute the ODE RHS Backwards Quadrature function. More...

static int	ewt (N_Vector y, N_Vector w, void *user_data)
	Error control function. More...

Static Protected Member Functions inherited from mfem::CVODESolver
static int	RHS (realtype t, const N_Vector y, N_Vector ydot, void *user_data)
	Number of components in gout. More...

static int	LinSysSetup (realtype t, N_Vector y, N_Vector fy, SUNMatrix A, booleantype jok, booleantype jcur, realtype gamma, void user_data, N_Vector tmp1, N_Vector tmp2, N_Vector tmp3)
	Setup the linear system \( A x = b \). More...

static int	LinSysSolve (SUNLinearSolver LS, SUNMatrix A, N_Vector x, N_Vector b, realtype tol)
	Solve the linear system \( A x = b \). More...

static int	root (realtype t, N_Vector y, realtype gout, void user_data)
	Prototype to define root finding for CVODE. More...

Protected Attributes
int	ncheck
	number of checkpoints used so far More...

int	indexB
	backward problem index More...

SUNMatrix	AB
	Linear system A = I - gamma J, M - gamma J, or J. More...

SUNLinearSolver	LSB
	Linear solver for A. More...

SundialsNVector *	q
	Quadrature vector. More...

SundialsNVector *	yB
	State vector. More...

SundialsNVector *	yy
	State vector. More...

SundialsNVector *	qB
	State vector. More...

Protected Attributes inherited from mfem::CVODESolver
int	lmm_type
	Linear multistep method type. More...

int	step_mode
	CVODE step mode (CV_NORMAL or CV_ONE_STEP). More...

int	root_components

RootFunction	root_func
	A class member to facilitate pointing to a user-specified root function. More...

EWTFunction	ewt_func
	A class member to facilitate pointing to a user-specified error weight function. More...

Protected Attributes inherited from mfem::ODESolver
TimeDependentOperator *	f
	Pointer to the associated TimeDependentOperator. More...

MemoryType	mem_type

Protected Attributes inherited from mfem::SundialsSolver
void *	sundials_mem
	SUNDIALS mem structure. More...

int	flag
	Last flag returned from a call to SUNDIALS. More...

bool	reinit
	Flag to signal memory reinitialization is need. More...

long	saved_global_size
	Global vector length on last initialization. More...

SundialsNVector *	Y
	State vector. More...

SUNMatrix	A

SUNMatrix	M
	Mass matrix M. More...

SUNLinearSolver	LSA
	Linear solver for A. More...

SUNLinearSolver	LSM
	Linear solver for M. More...

SUNNonlinearSolver	NLS
	Nonlinear solver. More...

Static Protected Attributes
static constexpr double	default_rel_tolB = 1e-4
	Default scalar backward relative tolerance. More...

static constexpr double	default_abs_tolB = 1e-9
	Default scalar backward absolute tolerance. More...

static constexpr double	default_abs_tolQB = 1e-9
	Default scalar backward absolute quadrature tolerance. More...

Static Protected Attributes inherited from mfem::SundialsSolver
static constexpr double	default_rel_tol = 1e-4
	Default scalar relative tolerance. More...

static constexpr double	default_abs_tol = 1e-9
	Default scalar absolute tolerance. More...

Additional Inherited Members
Protected Types inherited from mfem::CVODESolver
typedef std::function< int(realtype t, Vector y, Vector gout, CVODESolver *)>	RootFunction
	Typedef for root finding functions. More...

typedef std::function< int(Vector y, Vector w, CVODESolver *)>	EWTFunction
	Typedef declaration for error weight functions. More...

Protected Member Functions inherited from mfem::SundialsSolver
bool	Parallel () const

bool	Parallel () const

	SundialsSolver ()
	Protected constructor: objects of this type should be constructed only as part of a derived class. More...

void	AllocateEmptyNVector (N_Vector &y)

void	AllocateEmptyNVector (N_Vector &y, MPI_Comm comm)

Detailed Description

Definition at line 507 of file sundials.hpp.

Constructor & Destructor Documentation

◆ CVODESSolver() [1/2]

mfem::CVODESSolver::CVODESSolver ( int lmm )

Construct a serial wrapper to SUNDIALS' CVODE integrator.

Parameters

[in] lmm Specifies the linear multistep method, the options are: CV_ADAMS - implicit methods for non-stiff systems CV_BDF - implicit methods for stiff systems

Definition at line 964 of file sundials.cpp.

◆ CVODESSolver() [2/2]

mfem::CVODESSolver::CVODESSolver	(	MPI_Comm	comm,
		int	lmm
	)

Construct a parallel wrapper to SUNDIALS' CVODE integrator.

Parameters

[in]	comm	The MPI communicator used to partition the ODE system
[in]	lmm	Specifies the linear multistep method, the options are: CV_ADAMS - implicit methods for non-stiff systems CV_BDF - implicit methods for stiff systems

Definition at line 978 of file sundials.cpp.

◆ ~CVODESSolver()

mfem::CVODESSolver::~CVODESSolver ( )

virtual

Destroy the associated CVODES memory and SUNDIALS objects.

Definition at line 1316 of file sundials.cpp.

Member Function Documentation

◆ EvalQuadIntegration()

void mfem::CVODESSolver::EvalQuadIntegration	(	double	t,
		Vector &	q
	)

Evaluate Quadrature.

Definition at line 992 of file sundials.cpp.

◆ EvalQuadIntegrationB()

void mfem::CVODESSolver::EvalQuadIntegrationB	(	double	t,
		Vector &	dG_dp
	)

Evaluate Quadrature solution.

Definition at line 1002 of file sundials.cpp.

◆ ewt()

int mfem::CVODESSolver::ewt	(	N_Vector	y,
		N_Vector	w,
		void *	user_data
	)

staticprotected

Error control function.

Definition at line 1249 of file sundials.cpp.

◆ GetForwardSolution()

void mfem::CVODESSolver::GetForwardSolution	(	double	tB,
		mfem::Vector &	yy
	)

Get Interpolated Forward solution y at backward integration time tB.

Definition at line 1012 of file sundials.cpp.

◆ GetNumSteps()

long mfem::CVODESSolver::GetNumSteps ( )

Get Number of Steps for ForwardSolve.

◆ Init()

void mfem::CVODESSolver::Init ( TimeDependentAdjointOperator & f_ )

Initialize CVODE: Calls CVodeInit() and sets some defaults. We define this to force the time dependent operator to be a TimeDependenAdjointOperator.

Parameters

[in] f_ the TimeDependentAdjointOperator that defines the ODE system

Note: All other methods must be called after Init().

Definition at line 1021 of file sundials.cpp.

◆ InitAdjointSolve()

void mfem::CVODESSolver::InitAdjointSolve	(	int	steps,
		int	interpolation
	)

Initialize Adjoint.

Definition at line 1059 of file sundials.cpp.

◆ InitB()

void mfem::CVODESSolver::InitB ( TimeDependentAdjointOperator & f_ )

Initialize the adjoint problem.

Definition at line 1026 of file sundials.cpp.

◆ InitQuadIntegration()

void mfem::CVODESSolver::InitQuadIntegration	(	mfem::Vector &	q0,
		double	reltolQ = `1e-3`,
		double	abstolQ = `1e-8`
	)

Definition at line 1071 of file sundials.cpp.

◆ InitQuadIntegrationB()

void mfem::CVODESSolver::InitQuadIntegrationB	(	mfem::Vector &	qB0,
		double	reltolQB = `1e-3`,
		double	abstolQB = `1e-8`
	)

Initialize Quadrature Integration (Adjoint)

Definition at line 1086 of file sundials.cpp.

◆ LinSysSetupB()

int mfem::CVODESSolver::LinSysSetupB	(	realtype	t,
		N_Vector	y,
		N_Vector	yB,
		N_Vector	fyB,
		SUNMatrix	A,
		booleantype	jok,
		booleantype *	jcur,
		realtype	gamma,
		void *	user_data,
		N_Vector	tmp1,
		N_Vector	tmp2,
		N_Vector	tmp3
	)

static

Setup the linear system A x = b.

Definition at line 1148 of file sundials.cpp.

◆ LinSysSolveB()

int mfem::CVODESSolver::LinSysSolveB	(	SUNLinearSolver	LS,
		SUNMatrix	A,
		N_Vector	x,
		N_Vector	b,
		realtype	tol
	)

static

Solve the linear system A x = b.

Definition at line 1167 of file sundials.cpp.

◆ RHSB()

int mfem::CVODESSolver::RHSB	(	realtype	t,
		N_Vector	y,
		N_Vector	yB,
		N_Vector	yBdot,
		void *	user_dataB
	)

staticprotected

Wrapper to compute the ODE RHS backward function.

Definition at line 1233 of file sundials.cpp.

◆ RHSQ()

int mfem::CVODESSolver::RHSQ	(	realtype	t,
		const N_Vector	y,
		N_Vector	qdot,
		void *	user_data
	)

staticprotected

Wrapper to compute the ODE RHS Quadrature function.

Definition at line 1206 of file sundials.cpp.

◆ RHSQB()

int mfem::CVODESSolver::RHSQB	(	realtype	t,
		N_Vector	y,
		N_Vector	yB,
		N_Vector	qBdot,
		void *	user_dataB
	)

staticprotected

Wrapper to compute the ODE RHS Backwards Quadrature function.

Definition at line 1219 of file sundials.cpp.

◆ SetMaxNStepsB()

void mfem::CVODESSolver::SetMaxNStepsB ( int mxstepsB )

Set the maximum number of backward steps.

Definition at line 1065 of file sundials.cpp.

◆ SetSStolerancesB()

void mfem::CVODESSolver::SetSStolerancesB	(	double	reltol,
		double	abstol
	)

Tolerance specification functions for the adjoint problem.

It should be called after InitB() is called.

Parameters

[in]	reltol	the scalar relative error tolerance.
[in]	abstol	the scalar absolute error tolerance.

Definition at line 1180 of file sundials.cpp.

◆ SetSVtolerancesB()

void mfem::CVODESSolver::SetSVtolerancesB	(	double	reltol,
		Vector	abstol
	)

Tolerance specification functions for the adjoint problem.

It should be called after InitB() is called.

Parameters

[in]	reltol	the scalar relative error tolerance
[in]	abstol	the vector of absolute error tolerances

Definition at line 1186 of file sundials.cpp.

◆ SetWFTolerances()

void mfem::CVODESSolver::SetWFTolerances ( EWTFunction func )

Set multiplicative error weights.

Definition at line 1198 of file sundials.cpp.

◆ Step()

void mfem::CVODESSolver::Step	(	Vector &	x,
		double &	t,
		double &	dt
	)

virtual

Integrate the ODE with CVODE using the specified step mode.

Parameters

[out]	x	Solution vector at the requested output time x=x(t).
[in,out]	t	On output, the output time reached.
[in,out]	dt	On output, the last time step taken.

Note: On input, the values of t and dt are used to compute desired output time for the integration, tout = t + dt.

Reimplemented from mfem::CVODESolver.

Definition at line 1260 of file sundials.cpp.

◆ StepB()

void mfem::CVODESSolver::StepB	(	Vector &	w,
		double &	t,
		double &	dt
	)

virtual

Solve one adjoint time step.

Definition at line 1288 of file sundials.cpp.

◆ UseMFEMLinearSolverB()

void mfem::CVODESSolver::UseMFEMLinearSolverB ( )

Set Linear Solver for the backward problem.

Definition at line 1101 of file sundials.cpp.

◆ UseSundialsLinearSolverB()

void mfem::CVODESSolver::UseSundialsLinearSolverB ( )

Use built in SUNDIALS Newton solver.

Definition at line 1133 of file sundials.cpp.

Member Data Documentation

◆ AB

SUNMatrix mfem::CVODESSolver::AB

protected

Linear system A = I - gamma J, M - gamma J, or J.

Definition at line 530 of file sundials.hpp.

◆ default_abs_tolB

constexpr double mfem::CVODESSolver::default_abs_tolB = 1e-9

staticprotected

Default scalar backward absolute tolerance.

Definition at line 540 of file sundials.hpp.

◆ default_abs_tolQB

constexpr double mfem::CVODESSolver::default_abs_tolQB = 1e-9

staticprotected

Default scalar backward absolute quadrature tolerance.

Definition at line 542 of file sundials.hpp.

◆ default_rel_tolB

constexpr double mfem::CVODESSolver::default_rel_tolB = 1e-4

staticprotected

Default scalar backward relative tolerance.

Definition at line 538 of file sundials.hpp.

◆ indexB

int mfem::CVODESSolver::indexB

protected

backward problem index

Definition at line 514 of file sundials.hpp.

◆ LSB

SUNLinearSolver mfem::CVODESSolver::LSB

protected

Linear solver for A.

Definition at line 531 of file sundials.hpp.

◆ ncheck

int mfem::CVODESSolver::ncheck

protected

number of checkpoints used so far

Definition at line 513 of file sundials.hpp.

◆ q

SundialsNVector* mfem::CVODESSolver::q

protected

Quadrature vector.

Definition at line 532 of file sundials.hpp.

◆ qB

SundialsNVector* mfem::CVODESSolver::qB

protected

State vector.

Definition at line 535 of file sundials.hpp.

◆ yB

SundialsNVector* mfem::CVODESSolver::yB

protected

State vector.

Definition at line 533 of file sundials.hpp.

◆ yy

SundialsNVector* mfem::CVODESSolver::yy

protected

State vector.

Definition at line 534 of file sundials.hpp.

The documentation for this class was generated from the following files:

linalg/sundials.hpp
linalg/sundials.cpp

Public Member Functions

Static Public Member Functions

Static Protected Member Functions

Protected Attributes

Static Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CVODESSolver() [1/2]

◆ CVODESSolver() [2/2]

◆ ~CVODESSolver()

Member Function Documentation

◆ EvalQuadIntegration()

◆ EvalQuadIntegrationB()

◆ ewt()

◆ GetForwardSolution()

◆ GetNumSteps()

◆ Init()

◆ InitAdjointSolve()

◆ InitB()

◆ InitQuadIntegration()

◆ InitQuadIntegrationB()

◆ LinSysSetupB()

◆ LinSysSolveB()

◆ RHSB()

◆ RHSQ()

◆ RHSQB()

◆ SetMaxNStepsB()

◆ SetSStolerancesB()

◆ SetSVtolerancesB()

◆ SetWFTolerances()

◆ Step()

◆ StepB()

◆ UseMFEMLinearSolverB()

◆ UseSundialsLinearSolverB()

Member Data Documentation

◆ AB

◆ default_abs_tolB

◆ default_abs_tolQB

◆ default_rel_tolB

◆ indexB

◆ LSB

◆ ncheck

◆ q

◆ qB

◆ yB

◆ yy